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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACACCAGTAAGCTGCTTTTGGCTGTCATTGATGAGAATCACCGAGGAACTTATGATTTCATCTACCTTCCAATTGATTTTAAGgtatgtcattatgtgtgtgaaggttggaacttgtagtgagattaatagggtctgactcttgtggtgtttgctttcctcag

Basic information

species Zea mays
transcript GRMZM2G156956_T02
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G156956_T02 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os05g01240.2 (Oryza sativa), 5'ss of exon 12
GTACACCAGTAAGCTGCTTTTGGCTGTCATTGATGAGAATCACCGAGGAACTTATGATTTCATCTACCTTCCAATTGATTTTAAGgtatgtcattatgt-----gtgtgaa-ggttggaacttgtagtgagattaatagggtctgactcttgtggtgtttgctttcctcag
||||| | ||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||| || ||||||||||||||||| |    || | |     |||| || | ||| ||||   |||   |||  |  || |||||| |||   ||||  |||| |||||
GTACAACTGTAAGCTGCTTTTGGCTGTCATTGATGAGAACCACCGTGGAACCTACGATTTCATCTATCTCCCAATTGATTTTAAGgtctactttttttttcttagtgtaaaagattgcaactgtgagtacaatt--tcaggactgacttttgcaatgttcacttttctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60394908|gb|DN227777.1|DN227777
EST:     AGAATCACCGAGGAACTTATGATTTCATCTACCTTCCAATTGATTTTAAG                         AATAAATGTAACGTGGGATATGCATTCATCAATATGACGGATCCACAGCAG
genomic: AGAATCACCGAGGAACTTATGATTTCATCTACCTTCCAATTGATTTTAAGgtatgtcatt ... ctttcctcagAATAAATGTAACGTGGGATATGCATTCATCAATATGACGGATCCACAGCAG
EST: gi|5915119|gb|AW052760.1|AW052760
EST:     AGAATCACCGAGGAACTTATGATTTCATCTACCTTCCAATTGATTTTAAG                         AATAAATGTAACGTGGGATATGCATTCATCAATATGACGGATCCACAGCAG
genomic: AGAATCACCGAGGAACTTATGATTTCATCTACCTTCCAATTGATTTTAAGgtatgtcatt ... ctttcctcagAATAAATGTAACGTGGGATATGCATTCATCAATATGACGGATCCACAGCAG