1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ACTCCTGACAGTGCCAGATTAATGCTGCTTCGGCTACATAGCCGCTGGGTGGTTGCTGCAGGTGGCTTCTTGACTCATTCTGTGCCCTTGTATATGACAGgtaattgcagccctagtatatatgttttggaatctgtcagcaaggtaagaatatttttgatgggaacacattgattgttgttaaaacattgcctgtacttccag
species | Zea mays |
transcript | GRMZM2G155729_T03 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: GGTTGCTGCAGGTGGCTTCTTGACTCATTCTGTGCCCTTGTATATGACAG GAGTTGAAGTTTCTCCGCTTTGCTCTTATGCTGGAGAGAATCTAGAAGCTAEST: gi|148942819|gb|EC887852.2|EC887852
genomic: GGTTGCTGCAGGTGGCTTCTTGACTCATTCTGTGCCCTTGTATATGACAGgtaattgcag ... gtacttccagGAGTTGAAGTTTCTCCGCTTTGCTCTTATGCTGGAGAGAATCTAGAAGCTA
EST: GGTTGCTGCAGGTGGCTTCTTGACTCATTCTGTGCCCTTGTATATGACAG GAGTTGAAGTTTCTCCGCTTTGCTCTTATGCTGGAGAGAATCTAGAAGCTAEST: gi|211475229|gb|FL446078.1|FL446078
genomic: GGTTGCTGCAGGTGGCTTCTTGACTCATTCTGTGCCCTTGTATATGACAGgtaattgcag ... gtacttccagGAGTTGAAGTTTCTCCGCTTTGCTCTTATGCTGGAGAGAATCTAGAAGCTA
EST: GGTTGCTGCAGGTGGCTTCTTGACTCATTCTGTGCCCTTGTATATGACAG GAGTTGAAGTTTCTCCGCTTTGCTCTTATGCTGGAGAGAATCTAGAAGCTAEST: gi|40303703|gb|CK348090.1|CK348090
genomic: GGTTGCTGCAGGTGGCTTCTTGACTCATTCTGTGCCCTTGTATATGACAGgtaattgcag ... gtacttccagGAGTTGAAGTTTCTCCGCTTTGCTCTTATGCTGGAGAGAATCTAGAAGCTA
EST: GGTTGCTGCAGGTGGCTTCTTGACTCATTCTGTGCCCTTGTATATGACAG GAGTTGAAGTTTCTCCGCTTTGCTCTTATGCTGGAGAGAATCTAGAAGCTA
genomic: GGTTGCTGCAGGTGGCTTCTTGACTCATTCTGTGCCCTTGTATATGACAGgtaattgcag ... gtacttccagGAGTTGAAGTTTCTCCGCTTTGCTCTTATGCTGGAGAGAATCTAGAAGCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTCCTGACAGTGCCAGATTAATGCTGCTTCGGCTACATAGCCGCTGGGTGGTTGCTGCAGGTGGCTTCTTGACTCATTCTGTGCCCTTGTATATGACAGgtaattgcagccctagtatatatgttttggaatctgtcagcaaggtaagaatatttttgatgggaacacattgattgttgttaaaacattgcctgtacttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG