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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGAAGATGATTTTGCTACTCTTGCTGATAAGAGTATTTTTCCTGGGGATTTTCTCTGGGTCAGAGACTCTGAAATATATGAGAACCGTGACATTGCAGgtgaataatcaaatatatggtgtggcaaattatttctaaaaaaggagattgttgatggtttcaacttcaagtgatcgtttatgtgtttcag

Basic information

species Zea mays
transcript GRMZM2G154621_T03
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G154621_T01 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os03g09270.1 (Oryza sativa), 5'ss of exon 4
ATTGAAGATGATTTTGCTACTCTTGCTGATAAGAGTATTTTTCCTGGGGATTTTCTCTGGGTCAGAGACTCTGAAATATATGAGAACCGTGACATTGCAGgtgaataatcaaatatatggtgtggcaaattatttctaaaaaaggagattgttgatggtttcaacttcaagtgatcgtttatgtgtttcag
||||||||||||||||||||||||||||| ||| ||||||||||||| ||| |||| ||||| | ||| || ||||| || |||||||||||||| |||||||||  | ||| | ||   ||||   ||  |||||| ||||| || |||||||||||||     ||    |   | || ||||  |||||
ATTGAAGATGATTTTGCTACTCTTGCTGACAAGTGTATTTTTCCTGGAGATGTTCTATGGGTTAAAGATTCCGAAATCTACGAGAACCGTGACATAGCAGgtgaagcaacaattgta--atgtgctgaac-atttctgaaaaatgatattgttgatggttcatttttttctttgcccttgatgt--ttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12046878|gb|BF729017.1|BF729017
EST:     TTTTCTCTGGGTCAGAGACTCTGAAATATATGAGAACCGTGACATTGCAG                         ATGAGATTTCAGAACAAAAGGATGATATGCTACAGGCTGAGGAAGGCTTTC
genomic: TTTTCTCTGGGTCAGAGACTCTGAAATATATGAGAACCGTGACATTGCAGgtgaataatc ... tgtgtttcagATGAGATTTCAGAACAAAAGGATGATATGCTACAGGCTGAGGAAGGCTTTC
EST: gi|78027102|gb|DV495489.1|DV495489
EST:     TTTTCTCTGGGTCAGAGACTCTGAAATATATGAGAACCGTGACATTGCAG                         ATGAGATTTCAGAACAAAAGGATGATATGCTACAGGCTGAGGAAGGCTTTC
genomic: TTTTCTCTGGGTCAGAGACTCTGAAATATATGAGAACCGTGACATTGCAGgtgaataatc ... tgtgtttcagATGAGATTTCAGAACAAAAGGATGATATGCTACAGGCTGAGGAAGGCTTTC
EST: gi|5668534|gb|AI932049.1|AI932049
EST:     TTTTCTCTGGGTCAGAGACTCTGAAATATATGAGAACCGTGACATTGCAG                         ATGAGATTTCAGAACAAAAGGATGATATGCTACAGGCTGAGGAAGGCTTTC
genomic: TTTTCTCTGGGTCAGAGACTCTGAAATATATGAGAACCGTGACATTGCAGgtgaataatc ... tgtgtttcagATGAGATTTCAGAACAAAAGGATGATATGCTACAGGCTGAGGAAGGCTTTC
EST: gi|5456272|gb|AI833962.1|AI833962
EST:     TTTTCTCTGGGTCAGAGACTCTGAAATATATGAGAACCGTGACATTGCAG                         ATGAGATTTCAGAACAAAAGGATGATATGCTACAGGCTGAGGAAGGCTTTC
genomic: TTTTCTCTGGGTCAGAGACTCTGAAATATATGAGAACCGTGACATTGCAGgtgaataatc ... tgtgtttcagATGAGATTTCAGAACAAAAGGATGATATGCTACAGGCTGAGGAAGGCTTTC
EST: gi|211537951|gb|FL453879.1|FL453879
EST:     TTTTCTCTGGGTCAGAGACTCTGAAATATATGAGAMCCGTGACATTGCAG                         ATGAGATTTCAGAACAAAAGGATGATATGCTACAGGCTGAGGAAGGCTTTC
genomic: TTTTCTCTGGGTCAGAGACTCTGAAATATATGAGAACCGTGACATTGCAGgtgaataatc ... tgtgtttcagATGAGATTTCAGAACAAAAGGATGATATGCTACAGGCTGAGGAAGGCTTTC