1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
CAAACAAGGCAATATGTTGAAGGGAAACAAGCATGAAGAGGCTGCTGCCATGTTTGATCGCCTGGTCTTCACCAAGgtacgatgaaatggcgagaaattatgatttcagaagtcagtttgatctcttattggtacttatttactgattggatttttttttgtattctatatag
species | Zea mays |
transcript | GRMZM2G152127_T01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: ACAAGCATGAAGAGGCTGCTGCCATGTTTGATCGCCTGGTCTTCACCAAG GTGAAACGGGGACTAGGTGGAAGGGTTCGCCTGATTCTATCTGGCGCAGCTEST: gi|211036305|gb|FL124438.1|FL124438
genomic: ACAAGCATGAAGAGGCTGCTGCCATGTTTGATCGCCTGGTCTTCACCAAGgtacgatgaa ... ttctatatagGTGAAACGGGGACTAGGTGGAAGGGTTCGCCTGATTCTATCTGGCGCAGCT
EST: ACAAGCATGAAGAGGCTGCTGCCATGTTTGATCGCCTGGTCTTCACCAAG GTGAAACGGGGACTAGGTGGAAGGGTTCGGCTGATTCTATCTGGCGCA-CGEST: gi|76011816|gb|DT938986.1|DT938986
genomic: ACAAGCATGAAGAGGCTGCTGCCATGTTTGATCGCCTGGTCTTCACCAAGgtacgatgaa ... ttctatatagGTGAAACGGGGACTAGGTGGAAGGGTTCGCCTGATTCTATCTGGCGCAGC-
EST: ACAAGCATGAAGAGGCTGCTGCCATGTTTGATCGCCTGGTCTTCACCAAG GTGAAACGGGGACTAGGTGGAAGGGTTCGCCTGATTCTATCTGGCGCAGCT
genomic: ACAAGCATGAAGAGGCTGCTGCCATGTTTGATCGCCTGGTCTTCACCAAGgtacgatgaa ... ttctatatagGTGAAACGGGGACTAGGTGGAAGGGTTCGCCTGATTCTATCTGGCGCAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAACAAGGCAATATGTTGAAGGGAAACAAGCATGAAGAGGCTGCTGCCATGTTTGATCGCCTGGTCTTCACCAAGgtacgatgaaatggcgagaaattatgatttcagaagtcagtttgatctcttattggtacttatttactgattggatttttttttgtattctatatag
- - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - TGCTGC