1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ATTTCAGAGGAAGGACATTGTTATGCATGTGGAGGGTGTTAGTTCCCTTCGTCAACTTGTACATCAAGTAGTCCTCAACAATGAAGAAACAGCATTTGAGgtacattttttttgtattcattatgtttgtttcgagtggagcacagggaaaaaaaatcataacttcacatatgtgatatgattgcaagcgtcttagaaactttcacgcttgacactaaccctgaacacatatgaaggctttacactaaccctgaatacggcatgatgaacag
species | Zea mays |
transcript | GRMZM2G148913_T01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: GTCAACTTGTACATCAAGTAGTCCTCAACAATGAAGAAACAGCATTTGAG GAACTTGCTCGTGAGAGATTGTTGAAGGAGCTAGCGTCAGAGAAAGCAGCGEST: gi|113844226|gb|DW954395.1|DW954395
genomic: GTCAACTTGTACATCAAGTAGTCCTCAACAATGAAGAAACAGCATTTGAGgtacattttt ... tgatgaacagGAACTTGCTCGTGAGAGATTGTTGAAGGAGCTAGCGTCAGAGAAAGCAGCG
EST: GTCAACTTGTACATCAAGTAGTCCTCAACAATGAAGAAACAGCATTTGAG GAACTTGCTCGTGAGAGATTGTTGAAGGAGCTAGCGEST: gi|60398108|gb|DN230924.1|DN230924
genomic: GTCAACTTGTACATCAAGTAGTCCTCAACAATGAAGAAACAGCATTTGAGgtacattttt ... tgatgaacagGAACTTGCTCGTGAGAGATTGTTGAAGGAGCTAGCG
EST: GTCAACTTGTACATCAAGTAGTCCTCAACAATGAAGAAACAGCATTTGAG GAACTTGCTCGTGAGAGATTGTTGAAGGAGCTAGCGTCAGAGAAAGCAGCGEST: gi|60346633|gb|DN213606.1|DN213606
genomic: GTCAACTTGTACATCAAGTAGTCCTCAACAATGAAGAAACAGCATTTGAGgtacattttt ... tgatgaacagGAACTTGCTCGTGAGAGATTGTTGAAGGAGCTAGCGTCAGAGAAAGCAGCG
EST: GTCAACTTGTACATCAAGTAGTCCTCAACAATGAAGAAACAGCATTTGAG GAACTTGCTCGTGAGAGATTGTTGAAGGAGCTAGCGTCAGAGAAAGCAGCGEST: gi|5670870|gb|AI932133.1|AI932133
genomic: GTCAACTTGTACATCAAGTAGTCCTCAACAATGAAGAAACAGCATTTGAGgtacattttt ... tgatgaacagGAACTTGCTCGTGAGAGATTGTTGAAGGAGCTAGCGTCAGAGAAAGCAGCG
EST: GTCAACTTGTACATCAAGTAGTCCTCAACAATGAAGAAACAGCATTTGAG GAACTTGCTCGTGAGAGATTGTTGAAGGAGCTAGCGTCAGAGAAAGCAGCGEST: gi|6021803|gb|AW066731.1|AW066731
genomic: GTCAACTTGTACATCAAGTAGTCCTCAACAATGAAGAAACAGCATTTGAGgtacattttt ... tgatgaacagGAACTTGCTCGTGAGAGATTGTTGAAGGAGCTAGCGTCAGAGAAAGCAGCG
EST: GTCAACTTGTACATCAAGTAGTCCTCAACAATGAAGAAACAGCATTTGAG GAACTTGCTCGTGAGAGATTGTTGAAGGAGCTAGCGTCAGAGAAAGCAGCG
genomic: GTCAACTTGTACATCAAGTAGTCCTCAACAATGAAGAAACAGCATTTGAGgtacattttt ... tgatgaacagGAACTTGCTCGTGAGAGATTGTTGAAGGAGCTAGCGTCAGAGAAAGCAGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTCAGAGGAAGGACATTGTTATGCATGTGGAGGGTGTTAGTTCCCTTCGTCAACTTGTACATCAAGTAGTCCTCAACAATGAAGAAACAGCATTTGAGgtacattttttttgtattcattatgtttgtttcgagtggagcacagggaaaaaaaatcataacttcacatatgtgatatgattgcaagcgtcttagaaactttcacgcttgacactaaccctgaacacatatgaaggctttacactaaccctgaatacggcatgatgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA