1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GTCTTCGTGTGTGTGCCAATTATATTGCTTGCTTGTGTCCGACGCAGATCGGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAGgtacagagatactatatcttacagctaccaaaccgatcgcccatcgcaagcagcacgcgtctcgctcgggaacgaattaatcctggtcgatcccatggcgcgtttggtcaattgcag
species | Zea mays |
transcript | GRMZM2G146463_T01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: GGGTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAG GTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAACEST: gi|211420211|gb|FL465092.1|FL465092
genomic: GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAGgtacagagat ... tcaattgcagGTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
EST: GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAG GTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGTTGCTGCTCAACEST: gi|60396730|gb|DN229595.1|DN229595
genomic: GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAGgtacagagat ... tcaattgcagGTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
EST: GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAG GTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAACEST: gi|50330298|gb|CO525424.1|CO525424
genomic: GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAGgtacagagat ... tcaattgcagGTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
EST: GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAG GTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAACEST: gi|89759845|gb|DY688531.1|DY688531
genomic: GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAGgtacagagat ... tcaattgcagGTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
EST: GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAG GTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAACEST: gi|71430639|gb|DR811689.1|DR811689
genomic: GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAGgtacagagat ... tcaattgcagGTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
EST: GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAG GTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAACEST: gi|60353667|gb|DN220640.1|DN220640
genomic: GGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAGgtacagagat ... tcaattgcagGTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
EST: GCAACGATCTCGAG GTATGGGCAGGGCAGCTATAGGGACACAGGAAGGCGGTGCAGCTGCTCAAC
genomic: GCAACGATCTCGAGgtacagagat ... tcaattgcagGTATGGGCAGGGCAGCTCTCGGGGCACAGGAAGGCGGTGCTGCTGCTCAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTTCGTGTGTGTGCCAATTATATTGCTTGCTTGTGTCCGACGCAGATCGGCTGGGTGTCCAAGGACAGAAAGTGAGCAAGTACGGCAACGATCTCGAGgtacagagatactatatcttacagctaccaaaccgatcgcccatcgcaagcagcacgcgtctcgctcgggaacgaattaatcctggtcgatcccatggcgcgtttggtcaattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG