1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GACATCAAGTTTGCTGTTCATGCACACCCAACGTTGTCTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAGgtacatgtgcctatttgcccttatgctatatagtatatacataaatgattctttgtgtgaaaaatacaaacaaaatttgtgccctgtaccaaaaacgtgaacaaaaattgccttgacctttttctccttcaacag
species | Zea mays |
transcript | GRMZM2G145595_T02 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CACACCCAACGTTGTCTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAG GTTAACACAGCTGGTTCGCATTCTATGAATGAGCCAGTTGCGGTGTAGAGAEST: gi|20512800|gb|BQ279999.1|BQ279999
genomic: CACACCCAACGTTGTCTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAGgtacatgtgc ... ccttcaacagGTTAACACAGCTGGTTCGCATTCTATGAATGAGCCAGTTGCGGTGTAGAGA
EST: CACACCCAACGTTGTCTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAG GTTAACACAGCTGGTTCGCATTCTATGAATGAGCCAGTTGCGGTGTAGAGAEST: gi|13249875|gb|BG360780.1|BG360780
genomic: CACACCCAACGTTGTCTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAGgtacatgtgc ... ccttcaacagGTTAACACAGCTGGTTCGCATTCTATGAATGAGCCAGTTGCGGTGTAGAGA
EST: CACACCCAACGTTGTCTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAG GTTAACACAGCTGGTTCGCATTCTATGAATGAGCCAGTTGCGGTGTAGAGAEST: gi|211093993|gb|FL455618.1|FL455618
genomic: CACACCCAACGTTGTCTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAGgtacatgtgc ... ccttcaacagGTTAACACAGCTGGTTCGCATTCTATGAATGAGCCAGTTGCGGTGTAGAGA
EST: CACACCCAACGTTGTCTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAG GTTAACACAGCTGGTTCGCATTCTATGAATGAGCCAGTTGCGGTGTAGAGAEST: gi|37377273|gb|CF625226.1|CF625226
genomic: CACACCCAACGTTGTCTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAGgtacatgtgc ... ccttcaacagGTTAACACAGCTGGTTCGCATTCTATGAATGAGCCAGTTGCGGTGTAGAGA
EST: CACACCCAACGTTGTGTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAG GTTAACACAGCTGGTTCGCATTCTATGAATGAGCCAGTTGCGGTGTAGAGAEST: gi|211470346|gb|FL451277.1|FL451277
genomic: CACACCCAACGTTGTCTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAGgtacatgtgc ... ccttcaacagGTTAACACAGCTGGTTCGCATTCTATGAATGAGCCAGTTGCGGTGTAGAGA
EST: CACACCCAACGTTGTCTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAG GTTAACACAGCTGGTTCGCATTCTATGAATGAGCCAGTTGCGGTGTAGAGAEST: gi|16378429|gb|BI992442.1|BI992442
genomic: CACACCCAACGTTGTCTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAGgtacatgtgc ... ccttcaacagGTTAACACAGCTGGTTCGCATTCTATGAATGAGCCAGTTGCGGTGTAGAGA
EST: CACACCCAACGTTGTCTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAG GTTAACACAGCTGGTTCGCATTCTATGAATGAGCCAGTTGCGGTGTAGAGAEST: gi|6865111|gb|AW360461.1|AW360461
genomic: CACACCCAACGTTGTCTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAGgtacatgtgc ... ccttcaacagGTTAACACAGCTGGTTCGCATTCTATGAATGAGCCAGTTGCGGTGTAGAGA
EST: CACACCCAACGTTGTCTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAG GTTAACACAGCTGGTTCGCATTCTATGAATGAGCCAGTTGCGGTGTAGAGAEST: gi|13249874|gb|BG360779.1|BG360779
genomic: CACACCCAACGTTGTCTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAGgtacatgtgc ... ccttcaacagGTTAACACAGCTGGTTCGCATTCTATGAATGAGCCAGTTGCGGTGTAGAGA
EST: CACACCCAACGTTGTCTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAG GTTAACACAGCTGGTTCGCATTCTATGAATGAGCCAGTTGCGGTGTAGAGAEST: gi|6672118|gb|AW282293.1|AW282293
genomic: CACACCCAACGTTGTCTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAGgtacatgtgc ... ccttcaacagGTTAACACAGCTGGTTCGCATTCTATGAATGAGCCAGTTGCGGTGTAGAGA
EST: CACACCCAACGTTGTCTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAG GTTAACACAGCTGGTTCGCATTCTATGAATGAGCCAGTTGCGGTGTAGAGAEST: gi|32830615|gb|CD970293.1|CD970293
genomic: CACACCCAACGTTGTCTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAGgtacatgtgc ... ccttcaacagGTTAACACAGCTGGTTCGCATTCTATGAATGAGCCAGTTGCGGTGTAGAGA
EST: CACACCCAACGTTGTCTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAG GTTAACACAGCTGGTTCGCATTCTATGAATGAGCCAGTTGCGGTGTAGAGAEST: gi|26456706|gb|CA828289.1|CA828289
genomic: CACACCCAACGTTGTCTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAGgtacatgtgc ... ccttcaacagGTTAACACAGCTGGTTCGCATTCTATGAATGAGCCAGTTGCGGTGTAGAGA
EST: CACACCCAACGTTGTCTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAG GTTAACACAGCTGGTTCGCATTCTATGAATGAGCCAGTTGCGGTGTAGAGAEST: gi|20512799|gb|BQ279998.1|BQ279998
genomic: CACACCCAACGTTGTCTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAGgtacatgtgc ... ccttcaacagGTTAACACAGCTGGTTCGCATTCTATGAATGAGCCAGTTGCGGTGTAGAGA
EST: CACACCCAACGTTGTCTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAG GTTAACACAGCTGGTTCGCATTCTATGAATGAGCCAGTTGCGGTGTAGAGAEST: gi|6563894|gb|AW231516.1|AW231516
genomic: CACACCCAACGTTGTCTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAGgtacatgtgc ... ccttcaacagGTTAACACAGCTGGTTCGCATTCTATGAATGAGCCAGTTGCGGTGTAGAGA
EST: CACACCCAACGTTGTCTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAG GTTAACACAGCTGGTTCGCATTCTATGAATGAGCCAGTTGCGGTGTAGAGAEST: gi|32830552|gb|CD970230.1|CD970230
genomic: CACACCCAACGTTGTCTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAGgtacatgtgc ... ccttcaacagGTTAACACAGCTGGTTCGCATTCTATGAATGAGCCAGTTGCGGTGTAGAGA
EST: CACACCCAACGTTGTCTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAG GTTAACACAGCTGGTTCGCATTCTATGAATGAGCCAGTTGCGGTGTAGAGAEST: gi|211093994|gb|FL455619.1|FL455619
genomic: CACACCCAACGTTGTCTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAGgtacatgtgc ... ccttcaacagGTTAACACAGCTGGTTCGCATTCTATGAATGAGCCAGTTGCGGTGTAGAGA
EST: GTTGTTTGAAGATCTGGATGAACTTTTCAAGGCTGCCAAA GTTAACACAGCCGGTTTGCATTCTATGAATGAGCCAGTTGCGGTGTAGAGAEST: gi|32831600|gb|CD971278.1|CD971278
genomic: GTTGTCTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAGgtacatgtgc ... ccttcaacagGTTAACACAGCTGGTTCGCATTCTATGAATGAGCCAGTTGCGGTGTAGAGA
EST: CACACCCAACGTTGTCTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAG GTTAACACAGCTGGTTCGCATTCTATGAATGAGCCAGTTGCGGTGTAGAGAEST: gi|211093992|gb|FL455617.1|FL455617
genomic: CACACCCAACGTTGTCTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAGgtacatgtgc ... ccttcaacagGTTAACACAGCTGGTTCGCATTCTATGAATGAGCCAGTTGCGGTGTAGAGA
EST: CACACCCAACGTTGTCTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAG GTTAACACAGCTGGTTCGCATTCTATGAATGAGCCAGTTGCGGTGTAGAGA
genomic: CACACCCAACGTTGTCTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAGgtacatgtgc ... ccttcaacagGTTAACACAGCTGGTTCGCATTCTATGAATGAGCCAGTTGCGGTGTAGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACATCAAGTTTGCTGTTCATGCACACCCAACGTTGTCTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAGgtacatgtgcctatttgcccttatgctatatagtatatacataaatgattctttgtgtgaaaaatacaaacaaaatttgtgccctgtaccaaaaacgtgaacaaaaattgccttgacctttttctccttcaacag
- - - - - - - - - - - - - - - - - - CTGAAG