1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AGCTGCTGCAGGGCGTAGATTCAGTTGCTGCCAGTTCCAAGTCAATCTCGCAACCCCTTGGAGATCTTATTCACAACCCAGCTGTCCAGTATGCCACCATgtaagcagtatttggctggcaaacaaagcttcttactgttaatatttgcccttgtgattattctatttttgcag
species | Zea mays |
transcript | GRMZM2G143725_T02 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CAACCCCTTGGAGATCTTATTCACAACCCAGCTGTCCAGTATGCCACCAT AGTGGGAATACAGCTGTTGTATTGGAATAAGTAGGCAGCAAATGCGGTGGGEST: gi|83278191|gb|DV942199.1|DV942199
genomic: CAACCCCTTGGAGATCTTATTCACAACCCAGCTGTCCAGTATGCCACCATgtaagcagta ... atttttgcagAGTGGGAATACAGCTGTTGTATTGGAATAAGTAGGCAGCAAATGCGGTGGG
EST: CAACCCCTTGGAGATTTTATTCACAACCCAGCTGTCCAGTATGCCACCAT AGTGGGAATACAGCTGTTGTATTGGAATAAGTAGGCAGCAAATGCGGTGGGEST: gi|71445514|gb|DR826564.1|DR826564
genomic: CAACCCCTTGGAGATCTTATTCACAACCCAGCTGTCCAGTATGCCACCATgtaagcagta ... atttttgcagAGTGGGAATACAGCTGTTGTATTGGAATAAGTAGGCAGCAAATGCGGTGGG
EST: CAACCCCTTGGAGATCTTATTCACAACCCAGCTGTCCAGTATGCCACCAT AGTGGGAATACAGCTGTTGTATTGGAATAAGTAGGCAGCAAATGCGGTGGGEST: gi|4647594|gb|AI622669.1|AI622669
genomic: CAACCCCTTGGAGATCTTATTCACAACCCAGCTGTCCAGTATGCCACCATgtaagcagta ... atttttgcagAGTGGGAATACAGCTGTTGTATTGGAATAAGTAGGCAGCAAATGCGGTGGG
EST: CAACCCCTTGGAGATCTTATTCACAACCCAGCTGTCCAGTATGCCACCAT AGTGGGAATACAGCTGTTGTATTGGAATAAGTAGGCAGCAAATGCGGTGGG
genomic: CAACCCCTTGGAGATCTTATTCACAACCCAGCTGTCCAGTATGCCACCATgtaagcagta ... atttttgcagAGTGGGAATACAGCTGTTGTATTGGAATAAGTAGGCAGCAAATGCGGTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTGCTGCAGGGCGTAGATTCAGTTGCTGCCAGTTCCAAGTCAATCTCGCAACCCCTTGGAGATCTTATTCACAACCCAGCTGTCCAGTATGCCACCATgtaagcagtatttggctggcaaacaaagcttcttactgttaatatttgcccttgtgattattctatttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG