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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAACACATGCCAACACCTGAGCAATGGACTAATATTTTCAATCCAGCCTATGCGTATTATGTGTACTATTGCTATGCCAATCTGTATACACTGAACAAGgtacatctttttgtgcatgaagttcttcatcatgtgctcattttaggataagtaacacataaaatcttctgaaaaaaagataatagtgcgtgtttttttttcataaaataaattttagcttgcagttagcttcttgttcaacattcatctggttaaattacaatggttaatttgaaatttgttgagagcgcag

Basic information

species Zea mays
transcript GRMZM2G134396_T02
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G134396_T03 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os07g49270.2 (Oryza sativa), 5'ss of exon 14
AAAACACATGCCAACACCTGAGCAATGGACTAATATTTTCAATCCAGCCTATGCGTATTATGTGTACTATTGCTATGCCAATCTGTATACACTGAACAAGgta-catctttttgtgcatgaagttcttcatcatgtgctcattttaggataagtaacacataaaatcttctgaaaaaaagataatagtgcgtgtttttttttcataaaataaattttagcttgcagttagcttcttgttcaacattcatctggttaaattacaatggttaatttgaaatttgttgagagcgcag
|||||||||||| ||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||| ||||| ||  |||| || |||||||||||| |||   ||||| |    |  ||| | |  | | ||| ||  |     |||    || |  | |||||     ||   | ||  ||      | |     ||        | || | |  |  | || || ||||     |                                                  
AAAACACATGCCTACACCTGAGCAATGGACTAATGTTTTCAATCCAGCATATGCATATTATGTGTACTATTGTTATGCTAACTTGTACACGCTGAACAAGgtatcattcatttgtccccagatctctgcctgttcttctccttcaaattctagtttt-cagattagcttctctctcaacatttatgatgt---cctatcccctattggggctctcttggttgact-tgagatttttgtgatgtag-------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67028452|gb|CO457201.1|CO457201
EST:     ATGCGTATTATGTGTACTATTGCTATGCCAATCTGTATACACTGAACAAG                         CTTCGTGAGTCCAAGGGCATGACAACAATCAAACTTCGTCCACACTGTGGG
genomic: ATGCGTATTATGTGTACTATTGCTATGCCAATCTGTATACACTGAACAAGgtacatcttt ... gagagcgcagCTTCGTGAGTCCAAGGGCATGACAACAATCAAACTTCGTCCACACTGTGGG
EST: gi|32837964|gb|CD977642.1|CD977642
EST:     ACTATTGCTATGCCAATCTGTATACACTGAACAAG                         CTTCGTGAGTCCAAGGGCATGACAACAATCAAACTTCGTCCACACTGTGGG
genomic: ACTATTGCTATGCCAATCTGTATACACTGAACAAGgtacatcttt ... gagagcgcagCTTCGTGAGTCCAAGGGCATGACAACAATCAAACTTCGTCCACACTGTGGG
EST: gi|21987227|gb|BQ778755.1|BQ778755
EST:     ATGCGTATTATGTGTACTATTGCTATGCCAATCTGTATACACTGAACAAG                         CTTCGTGAGTCCAAGGGCATGACAACAATCAAACTTCGTCCACACTGTGGG
genomic: ATGCGTATTATGTGTACTATTGCTATGCCAATCTGTATACACTGAACAAGgtacatcttt ... gagagcgcagCTTCGTGAGTCCAAGGGCATGACAACAATCAAACTTCGTCCACACTGTGGG
EST: gi|26557914|gb|CA830149.1|CA830149
EST:     ATGCGTATTATGTGTACTATTGCTATGCCAATCTGTATACACTGAACAAG                         CTTCGTGAGTCCAAGGGCATGACAACAATCAAACTTCGTCCACACTGCGGG
genomic: ATGCGTATTATGTGTACTATTGCTATGCCAATCTGTATACACTGAACAAGgtacatcttt ... gagagcgcagCTTCGTGAGTCCAAGGGCATGACAACAATCAAACTTCGTCCACACTGTGGG
EST: gi|32832752|gb|CD972430.1|CD972430
EST:     ACTATTGCTATGCCAATCTGTATACACTGAACAAG                         CTTCGTGAGTCCAAGGGCATGACAACAATCAAACTTCGTCCACACTGTGGG
genomic: ACTATTGCTATGCCAATCTGTATACACTGAACAAGgtacatcttt ... gagagcgcagCTTCGTGAGTCCAAGGGCATGACAACAATCAAACTTCGTCCACACTGTGGG
EST: gi|74237693|gb|DT645607.1|DT645607
EST:     ATGCGTATTATGTGTACTATTGCTATGCCAATCTGTATACACTGAACAAG                         CTTCGTGAGTCCAAGGGCATGACAACAATCAAACTTCGTCCACACTGTGGG
genomic: ATGCGTATTATGTGTACTATTGCTATGCCAATCTGTATACACTGAACAAGgtacatcttt ... gagagcgcagCTTCGTGAGTCCAAGGGCATGACAACAATCAAACTTCGTCCACACTGTGGG
EST: gi|211424036|gb|FL301688.1|FL301688
EST:     ATGCGTATTATGTGTACTATTGCTATGCCAATCTGTATACACTGAACAAG                         CTTCGTGAGTCCAAGGGCATGACAACAATCAAACTTCGTCCACACTGTGGG
genomic: ATGCGTATTATGTGTACTATTGCTATGCCAATCTGTATACACTGAACAAGgtacatcttt ... gagagcgcagCTTCGTGAGTCCAAGGGCATGACAACAATCAAACTTCGTCCACACTGTGGG
EST: gi|71299098|gb|DR785546.1|DR785546
EST:     ATGCGTATTATGTGTACTATTGCTATGCCAATCTGTATACACTGAACAAG                         CTTCGTGAGTCCAAGGGCATGACAACAATCAAACTTCGTCCACACTGTGGG
genomic: ATGCGTATTATGTGTACTATTGCTATGCCAATCTGTATACACTGAACAAGgtacatcttt ... gagagcgcagCTTCGTGAGTCCAAGGGCATGACAACAATCAAACTTCGTCCACACTGTGGG
EST: gi|211424037|gb|FL301689.1|FL301689
EST:     ATGCGTATTATGTGTACTATTGCTATGCCAATCTGTATACACTGAACAAG                         CTTCGTGAGTCCAAGGGCATGACAACAATCAAACTTCGTCCACACTGTGGG
genomic: ATGCGTATTATGTGTACTATTGCTATGCCAATCTGTATACACTGAACAAGgtacatcttt ... gagagcgcagCTTCGTGAGTCCAAGGGCATGACAACAATCAAACTTCGTCCACACTGTGGG
EST: gi|211424038|gb|FL301690.1|FL301690
EST:     ATGCGTATTATGTGTACTATTGCTATGCCAATCTGTATACACTGAACAAG                         CTTCGTGAGTCCAAGGGCATGACAACAATCAAACTTCGTCCACACTGTGGG
genomic: ATGCGTATTATGTGTACTATTGCTATGCCAATCTGTATACACTGAACAAGgtacatcttt ... gagagcgcagCTTCGTGAGTCCAAGGGCATGACAACAATCAAACTTCGTCCACACTGTGGG
EST: gi|78121620|gb|DV540004.1|DV540004
EST:     ATGCGTATTATGTGTACTATTGCTATGCCAATCTGTATACACTGAACAAG                         CTTCGTGAGTCCAAGGGCATGACAACAATCAAACTTCGTCCACACTGTGGG
genomic: ATGCGTATTATGTGTACTATTGCTATGCCAATCTGTATACACTGAACAAGgtacatcttt ... gagagcgcagCTTCGTGAGTCCAAGGGCATGACAACAATCAAACTTCGTCCACACTGTGGG
EST: gi|211424039|gb|FL301691.1|FL301691
EST:     ATGCGTATTATGTGTACTATTGCTATGCCAATCTGTATACACTGAACAAG                         CTTCGTGAGTCCAAGGGCATGACAACAATCAAACTTCGTCCACACTGTGGG
genomic: ATGCGTATTATGTGTACTATTGCTATGCCAATCTGTATACACTGAACAAGgtacatcttt ... gagagcgcagCTTCGTGAGTCCAAGGGCATGACAACAATCAAACTTCGTCCACACTGTGGG