Sequence
atgc intronic sequence ATGC exonic sequenceAAACACGTCACACCCAAATTTTATTGGTGGCAGCAAGGCTGTTGAGCAAGCACAGCAGCAAGTTAGGTCTGCCAAAATGTCAGCAGCGGTGGTAAGAAAGgtatgaatgttattgtcaaccgttataataacaatctgtatggtaatggatgtgacctgatggtagcatagttgttaaggcgtccttaaagcatcactta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G129155_T01 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os01g69130.2 (Oryza sativa), 5'ss of exon 13
---AAACACGTCACACCCAAATTTTATTGGTGGCAGCAAGGCTGTTGAGCAAGCACAGCAGCAAGTTAGGTCTGCCAAAATGTCAGCAGCGGTGGTAAGAAAGgtatgaatgt-tattgtcaaccgttataataacaatct--gtatggtaat--ggatgtgacctgatggtagcatagttgttaaggcgtccttaaagcatcactta
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CATAAACACATCTCATCCAAATTTCATCGGCGGCAGCAAGGCTGTTGAGCAAGCACAGCAGCAAGTTAGGTCTTCTAGACTG---GCAGCTGTGGCTAGAAGAgtatgtatacatcatatgcaccattaccttttccttttcgttctgattttctaaaaacaatttaataacaatatggtag--aatcactgccaagtacattgt---
upper sequence: GRMZM2G129155_T01 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA15G06380.1 (Glycine max), 5'ss of exon 13
AAACACGTCACACCCAAATTTTATTGGTGGCAGCAAGGCTGTTGAGCAAGCACAGCAGCAAGTTAGGTCTGCCAAAATGTCAGCAGCGGTGGTAAG---AAAGgtatgaatgttattgtcaaccgttataataacaatctgtat----------ggtaatggatgtgacctgatggtagcatagttgttaaggcgtccttaaagcatcactta-----
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---CACTTCCCACCCAAATTTTATTGGTGGAAGCAAGGCATTAGAAATAGCTGCACAGCAGACCAAGTCGTCTAGGGTTGCTATACCAGTTTCTAGGCAAAAGgtatacttgttataagatctaattccaaatatgccccatatttttcatttgagatatgtattctaatttatgttggccttttttttctttcaaaattttcgtattaatcctatag
upper sequence: GRMZM2G129155_T01 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA13G32940.1 (Glycine max), 5'ss of exon 13
AAACACGTCACACCCAAATTTTATTGGTGGCAGCAAGGCTGTTGAGCAAGCACAGCAGCAAGTTAGGTCTGCCAAAATGTCAGCAGCGGTGGTAAG---AAAGgtatgaatgttattgtcaaccgttataataacaatctgtatg----gtaatggatgtgacctgatggtagcat-agttgttaaggcgtccttaaagcatcac-tta-----------
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---CACTTCCCACCCAAATTTTATTGGTGGAAGCAAGGCATTAGAAATAGCTGCGCAACAGACCAAGTCCTCTAGGGTTGCTATACCAGTTTCTAGGCAAAAGgtatacttgttatgagatctaattccaaatatgccccatatttttcatttgagatatgtattcttatttgtgttggcctttcttttctctttaaattttcttattaatctcctatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211302450|gb|FL244056.1|FL244056EST: CAAGTTAGGTCTGCCAAAATGTCAGCAGCGGTGGTAAGAAAG GACGGAGTGGATGCACAGGCTTCTGAGAAAACTCAAAAATCACGCGCGATC
genomic: CAAGTTAGGTCTGCCAAAATGTCAGCAGCGGTGGTAAGAAAGgtatgaatgt ... tggatcgcagGACGGAGTGGATGCACAGGCTTCTGAGAAAACTCAAAAATCACGCGCGATC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAACACGTCACACCCAAATTTTATTGGTGGCAGCAAGGCTGTTGAGCAAGCACAGCAGCAAGTTAGGTCTGCCAAAATGTCAGCAGCGGTGGTAAGAAAGgtatgaatgttattgtcaaccgttataataacaatctgtatggtaatggatgtgacctgatggtagcatagttgttaaggcgtccttaaagcatcactta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA