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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATATGAAGGGATGATAGTTGGTGAGCACTCACGTGACAGTGATCTTGAGgtatgatggtcaaatacaaatcacggcctatttctttctctttctatacttgaagttaatgtctctttggcag

Basic information

species Zea mays
transcript GRMZM2G128688_T02
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128688_T01 (Zea mays), 5'ss of exon 16
lower sequence: LOC_Os01g54910.1 (Oryza sativa), 5'ss of exon 16
GCATATGAAGGGATGATAGTTGGTGAGCACTCACGTGACAGTGATCTTGAGgtatgatggtcaaatacaaatcacggcctatttctttctctttctatacttgaagttaatgtctctttggcag-----
|| || ||||| ||||| ||||| |||||||||||||||||||||||||| ||| | || | | || |  ||||  |  | |   ||||||||   ||||   || | |||  |||||  |  |     
GCGTACGAAGGCATGATTGTTGGAGAGCACTCACGTGACAGTGATCTTGATgtaagttgattatatgcttatcaatgaat-taggtttctcttctaatacacaaactaaataactcttctgttgttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71428851|gb|DR809901.1|DR809901
EST:     CATATGAAGGGATGATAGTTGGTGAGCACTCACGTGACAGTGATCTTGAG                         GTGAATCCTGTGAGAACTAAAGAACTTACAAATATCCGAGCCCCTGGAAAG
genomic: CATATGAAGGGATGATAGTTGGTGAGCACTCACGTGACAGTGATCTTGAGgtatgatggt ... tctttggcagGTGAATCCTGTGAGAACTAAAGAACTTACAAATATCCGAGCCCCTGGAAAG
EST: gi|32936632|gb|CF041451.1|CF041451
EST:     CATATGAAGGGATGATAGTTGGTGAGCACTCACGTGACAGTGATCTTGAG                         GTGAATCCTGTGAGAACTAAAGAACTTACAAATATCCGAGCCCCTGGAAAG
genomic: CATATGAAGGGATGATAGTTGGTGAGCACTCACGTGACAGTGATCTTGAGgtatgatggt ... tctttggcagGTGAATCCTGTGAGAACTAAAGAACTTACAAATATCCGAGCCCCTGGAAAG