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GTATCTACGAGAAGTTTGCATCTGCATTCATCAAGGCTGTTCAGAGTTTGAAGGTTGGGAATGGGCTAGAAGAGAGTACATCTCAGgtataaaattctaataattaccattatcaccatgataaataacctagtactattttccaactttgtatgtcttgcattcattgcataaacagtgttttgc...
species | Zea mays |
transcript | GRMZM2G128114_T01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: GTACATCTCAG GGTCCTCTGATTAACGAAGCTGCTGTTCAAAAGEST: gi|84980453|gb|DW530802.1|DW530802
genomic: GTACATCTCAGgtataaaatt ... tcatatgcagGGTCCTCTGATTAACGAAGCTGCTGTTCAAAAG
EST: CTGTTCAGAGTTTGAAGGTTGGGAATGGGCTAGAAGAGAGTACATCTCAG GGTCCTCTGATTAACGAAGCTGCTGTTCAAAAGEST: gi|32856352|gb|CD996033.1|CD996033
genomic: CTGTTCAGAGTTTGAAGGTTGGGAATGGGCTAGAAGAGAGTACATCTCAGgtataaaatt ... tcatatgcagGGTCCTCTGATTAACGAAGCTGCTGTTCAAAAG
EST: CTGTTCAGAGTTTGAAGGTTGGGAATGGGCTAGAAGAGAGTACATCTCAG GGTCCTCTGATTAACGAAGCTGCTGTTCAAAAGEST: gi|67026356|gb|CO455105.1|CO455105
genomic: CTGTTCAGAGTTTGAAGGTTGGGAATGGGCTAGAAGAGAGTACATCTCAGgtataaaatt ... tcatatgcagGGTCCTCTGATTAACGAAGCTGCTGTTCAAAAG
EST: CTGTTCAGAGTTTGAAGGTTGGGAATGGGCTAGAAGAGAGTACATCTCAG GGTCCTCTGATTAACGAAGCTGCTGTTCNAAAG
genomic: CTGTTCAGAGTTTGAAGGTTGGGAATGGGCTAGAAGAGAGTACATCTCAGgtataaaatt ... tcatatgcagGGTCCTCTGATTAACGAAGCTGCTGTTCAAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATCTACGAGAAGTTTGCATCTGCATTCATCAAGGCTGTTCAGAGTTTGAAGGTTGGGAATGGGCTAGAAGAGAGTACATCTCAGgtataaaattctaataattaccattatcaccatgataaataacctagtactattttccaactttgtatgtcttgcattcattgcataaacagtgttttgc
- - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA