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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCGCTGATCTAAAATACATTGATCCAACATATATGGTTCGGGCCTGCCGGGCAAATGCATCTGATGCTATTCTCTGCACCGTACTTGGGCAAAATGCTgtaagttgatttcttttcattttgtgttagtattcatttcaatgcaagagtaggatttttacagaacaaaattgtatggatgtcctttag

Basic information

species Zea mays
transcript GRMZM2G127717_T02
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G127717_T01 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os09g24910.2 (Oryza sativa), 5'ss of exon 13
TCCCGCTGATCTAAAATACATTGATCCAACATATATGGTTCGGGCCTGCCGGGCAAATGCATCTGATGCTATTCTCTGCACCGTACTTGGGCAAAATGCTgtaagttgatttcttttcattttgtgttagtattcatttca---atgcaagagtag--------gatttttacagaacaaaattgtatggatgtcctttag----------
||| |||||| |||||||||||||||| ||||||||||| |||||||| || || |||||||||||||||||  | ||||| |||||||| ||||||||||| ||||    | ||| |  |||||  |  |||    ||||   ||| | || ||         ||| |||    |     | ||| || |  ||   | |          
TCCAGCTGATGTAAAATACATTGATCCGACATATATGGTCCGGGCCTGTCGTGCGAATGCATCTGATGCTATCTTGTGCACTGTACTTGGACAAAATGCTgtgagttcgcgtttttcctgtttgtccttctatatccttcacagatgtatgaatatcatttatcgatctttttgaattttgagtgtttgaaaatcgaatggttttctgtag

upper sequence: GRMZM2G127717_T01 (Zea mays), 5'ss of exon 13
lower sequence: Vv14s0108g00540.t01 (Vitis vinifera), 5'ss of exon 13
TCCCGCTGATCTAAAATACATTGATCCAACATATATGGTTCGGGCCTGCCGGGCAAATGCATCTGATGCTATTCTCTGCACCGTACTTGGGCAAAATGCTgtaagttgatttcttttcattttgtgttagtattcatttcaatgcaagagtaggatttttacagaacaaaattgtatggatgtcctttag
||| |||||| | |||||||||||||| || |||||| |||| || || || |||||||||||||||||| |||| ||||| || ||||| || ||||||||||||  ||   | |    ||  || || | || |  |  || || |  ||  ||  |   | |  |   ||| |              
TCCAGCTGATGTTAAATACATTGATCCCACTTATATGATTCGAGCGTGTCGAGCAAATGCATCTGATGCTGTTCTTTGCACTGTTCTTGGCCAGAATGCTgtaagtgtatgaatatc---ttcatgataatcttgagat-gatccaggtctacaatggtggtatatgatccttgcag-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17929608|gb|BM266568.1|BM266568
EST:     GGCAAAATGCATCTGATGCTATTCTCTGCACCGTACTTGGGCAAAATGCT                         GTCCATGGAGCATTTGCTGGGTTCAGTGGCATCACGTCAGGTGTTTGCAAC
genomic: GGC-AAATGCATCTGATGCTATTCTCTGCACCGTACTTGGGCAAAATGCTgtaagttgat ... tgtcctttagGTCCATGGAGCATTTGCTGGGTTCAGTGGCATCACGTCAGGTGTTTGCAAC
EST: gi|12968916|gb|BG265757.1|BG265757
EST:     GGGCAAATGCATCTGACGCTATTCTCTGCACCGTACTTGGGCAAAACGCT                         GTCCATGGAGCATTTGCTGGGTTCAGTGGCATCACGTCAGGTGTTTGCAAC
genomic: GGGCAAATGCATCTGATGCTATTCTCTGCACCGTACTTGGGCAAAATGCTgtaagttgat ... tgtcctttagGTCCATGGAGCATTTGCTGGGTTCAGTGGCATCACGTCAGGTGTTTGCAAC
EST: gi|56382617|gb|CV985286.1|CV985286
EST:     GGGCAAATGCATCTGATGCTATTCTCTGCACCGTACTTGGGCAAAATGCT                         GTCCATGGAGCATTTGCTGGGTTCAGTGGCATCACGTCAGGTGTTTGCAAC
genomic: GGGCAAATGCATCTGATGCTATTCTCTGCACCGTACTTGGGCAAAATGCTgtaagttgat ... tgtcctttagGTCCATGGAGCATTTGCTGGGTTCAGTGGCATCACGTCAGGTGTTTGCAAC
EST: gi|31361900|gb|CD446257.1|CD446257
EST:     GGGCAAATGCATCTGATGCTATTCTTTGCACCGTACTTGGGCAAAATGCT                         GTCCATGGAGCATTTGCTGGGTTCAGTGGCATCACGTCAGGTGTTTGCAAC
genomic: GGGCAAATGCATCTGATGCTATTCTCTGCACCGTACTTGGGCAAAATGCTgtaagttgat ... tgtcctttagGTCCATGGAGCATTTGCTGGGTTCAGTGGCATCACGTCAGGTGTTTGCAAC
EST: gi|31361085|gb|CD445442.1|CD445442
EST:     GGGCAAATGCATCTGATGCTATTCTCTGCACCGTACTTGGGCAAAATGCT                         GTCCATGGAGCATTTGCTGGGTTCAGTGGCATCACGTCAGGTGTTTGCAAC
genomic: GGGCAAATGCATCTGATGCTATTCTCTGCACCGTACTTGGGCAAAATGCTgtaagttgat ... tgtcctttagGTCCATGGAGCATTTGCTGGGTTCAGTGGCATCACGTCAGGTGTTTGCAAC
EST: gi|76283550|gb|DV023118.1|DV023118
EST:     GGGCAAATGCATCTGATGCTATTCTCTGCACCGTACTTGGGCAAAATGCT                         GTCCATGGAGCATTTGCTGGGTTCAGTGGCATCACGTCAGGTGTTTGCAAC
genomic: GGGCAAATGCATCTGATGCTATTCTCTGCACCGTACTTGGGCAAAATGCTgtaagttgat ... tgtcctttagGTCCATGGAGCATTTGCTGGGTTCAGTGGCATCACGTCAGGTGTTTGCAAC
EST: gi|50339174|gb|CO534300.1|CO534300
EST:     GCACCGTACTTGGGCAAAATGCT                         GTCCATGGAGCATTTGCTGGGTTCAGTGGCATCACGTCAGGTGTTTGCAAC
genomic: GCACCGTACTTGGGCAAAATGCTgtaagttgat ... tgtcctttagGTCCATGGAGCATTTGCTGGGTTCAGTGGCATCACGTCAGGTGTTTGCAAC
EST: gi|32836430|gb|CD976108.1|CD976108
EST:     ACTTGGGCAAAATGCT                         GTCCATGGAGCATTTGCTGGGTTCAGTGGCATCACGTCAGGTGTTTGCAAC
genomic: ACTTGGGCAAAATGCTgtaagttgat ... tgtcctttagGTCCATGGAGCATTTGCTGGGTTCAGTGGCATCACGTCAGGTGTTTGCAAC
EST: gi|32932003|gb|CF036815.1|CF036815
EST:     GTACTTGGGCAAAATGCT                         GTCCATGGAGCATTTGCTGGGTTCAGTGGCATCACGTCAGGTGTTTGCAAC
genomic: GTACTTGGGCAAAATGCTgtaagttgat ... tgtcctttagGTCCATGGAGCATTTGCTGGGTTCAGTGGCATCACGTCAGGTGTTTGCAAC
EST: gi|18164682|gb|BM334521.1|BM334521
EST:     GGGCAAATGCATCTGATGCTATTCTCTGCACCGTACTTGGGCAAAATGCT                         GTCCATGGAGCATTTGCTGGGTTCAGTGGCATCACGTCAGGTGTTTGCAAC
genomic: GGGCAAATGCATCTGATGCTATTCTCTGCACCGTACTTGGGCAAAATGCTgtaagttgat ... tgtcctttagGTCCATGGAGCATTTGCTGGGTTCAGTGGCATCACGTCAGGTGTTTGCAAC
EST: gi|78021223|gb|DV489610.1|DV489610
EST:     GGGCAAATGCATCTGACGCTATTCTCTGCACCGTACTTGGGCAAAACGCT                         GTCCATGGAGCATTTGCTGGGTTCAGTGGCATCACGTCAGGTGTTTGCAAC
genomic: GGGCAAATGCATCTGATGCTATTCTCTGCACCGTACTTGGGCAAAATGCTgtaagttgat ... tgtcctttagGTCCATGGAGCATTTGCTGGGTTCAGTGGCATCACGTCAGGTGTTTGCAAC