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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTGACTACTGTGATCTTAGTGTAGACGAACGCCTCAATGCTTTGGTTGCACTTATTGCCGTTGCTAACGAGGGAAATTCTATCCGTGCAATTCTGGAGgtaatgtttctattgcgattttgttatcttgctattttcccattgaacatcatctgaacaagagacttttcag

Basic information

species Zea mays
transcript GRMZM2G125294_T01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G125294_T01 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os05g48820.1 (Oryza sativa), 5'ss of exon 13
GGGTGACTACTGTGATCTTAGTGTAGACGAACGCCTCAATGCTTTGGTTGCACTTATTGCCGTTGCTAACGAGGGAAATTCTATCCGTGCAATTCTGGAGgtaatgtttctattgcgattttgttatcttgctattttcccattgaacatcatctgaacaagagacttttcag
|||||||||||||||||| ||||| || || ||||||||||| ||||||||| | ||||  ||||| |  || ||||||||||| |||||| |||| |||||||| | |||     ||| ||| |||||||  ||||||||||   |  | | |  ||  ||   |||| |||
GGGTGACTACTGTGATCTCAGTGTTGAGGAGCGCCTCAATGCATTGGTTGCATTGATTGGTGTTGCCACTGAAGGAAATTCTATACGTGCAGTTCTTGAGgtaat-tatcttgcatgatcttgatatcttgtcattttcccatc--atctgaaccaaa--aggatctttgcag