Sequence
atgc intronic sequence ATGC exonic sequenceATTTGGTGGTGTGTTACTTGCTATGTGTACAAATGACTTCATTTGCTTTTATGATTGGGTGGAATGCAGATTGATACGTCGAATTGATGTCAATGTGAAGgtaatggaatttgttaccttattatttcaaacctttttttacattcatgccatttgaaatgttgtgccactcaaaacatgtttctttgtgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G124886_T01 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os02g11840.2 (Oryza sativa), 5'ss of exon 4
ATTTGGTGGTGTGTTACTTGCTATGTGTACAAATGACTTCATTTGCTTTTATGATTGGGTGGAATGCAGATTGATACGTCGAATTGATGTCAATGTGAAGgtaatggaatttgttaccttattatttcaaacctttttttacattcatgccatttgaaatgttgtgccactcaaaa-----catgtttctttgtgtag
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ATTTGGTGGAGTATTGCTGGCTATGTGTACAAATGATTTTATTTGCTTCCATGACTGGGCAGAGGGCAGGATGATACGCAGAATTGATGTCAATGTGAAAgtgagtaattttgtt----catggattcaaatttattttg-----cgtgtcatttggaatattatgatgctaaataggatccgctttcttatttgtag
upper sequence: GRMZM2G124886_T01 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os02g11830.2 (Oryza sativa), 5'ss of exon 13
ATTTGGTGGTGTGTTACTTGCTATGTGTACAAATGACTTCATTTGCTTTTATGATTGGGTGGAATGCAGATTGATACGTCGAATTGATGTCAATGTGAAGgtaatggaatttgttaccttattatttcaaacctttttttacattcatgccatttgaaatgttgtgccactcaa---aacatgtttctttgt--gtag
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ATTTGGTGGAGTATTGCTGGCTATGTGTACAAATGATTTTATTTGCTTCCATGACTGGGCAGAGGGCAGGATGATACGCAGAATTGATGTCAATGTGAAAgtgagtaattttgttcctggatt----taaatttttttttgcgt----gtcatttggaatattatgatgctaaataggatctgctttcttatttgtag
upper sequence: GRMZM2G124886_T01 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 2
ATTTGGTGGTGTGTTACTTGCTATGTGTACAAATGACTTCATTTGCTTTTATGATTGGGTGGAATGCAGATTGATACGTCGAATTGATGTCAATGTGAAGgtaatggaatttgttacct--tattatttcaaacctttttttacattcatgccatttgaaatgttgtgccactcaaaacatgtttctttgtgtag-
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ATTTGGTGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTATGATTGGGCTGAATGCAGGTTGATTCGTCGTATTGATGTTAATGTTAAAgtaagtgcttgcatgaggtgacatcagctttctgcttttatttc-ttcttactgtttct--tgttaattttgttaaaa----ttttcttgtgtcag
upper sequence: GRMZM2G124886_T01 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 13
ATTTGGTGGTGTGTTACTTGCTATGTGTACAAATGACTTCATTTGCTTTTATGATTGGGTGGAATGCAGATTGATACGTCGAATTGATGTCAATGTGAAGgtaatggaatttgttaccttattatttcaaacctttttttacattcatgccatttgaaatgttgtgccactcaaaacatgtttctttgtgtag
||||||||| |||| || ||||| | || || ||||| ||||||||||| |||| |||||||| ||||| ||| ||||||||||||||||| |||| | | |||| | | |||| | | | | | | | ||| | | | | | | | | ||| ||
ATTTGGTGGCACTCTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGGCTGAATGCAGGTTGATCTATCGCATTGATGTCAATGTGAAAgtaa-gtactttgattaggtgacattt-agttatctgctcttttccttcttattcattgtttaatataattttgttattaatcttgtgt-cag
upper sequence: GRMZM2G124886_T01 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 13
ATTTGGTGGTGTGTTACTTGCTATGTGTACAAATGACTTCATTTGCTTTTATGATTGGGTGGAATGCAGATTGATACGTCGAATTGATGTCAATGTGAAGgtaatggaatttgttaccttattatttcaaacctttttttacattcatgccatttgaaatgttgtgccactcaaaacatgtttctttgtgtag-
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ATTCGGTGGCACTTTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGGCTGAATGCAGGTTGATCTATCGCATTGATGTCAATGTGAAAgtaa-gtactttgattaggtgacatct-agttatctgctcttttccttcttattcgttgt-ttaatttaattttgttat-ttatcttgtgtcag
upper sequence: GRMZM2G124886_T01 (Zea mays), 5'ss of exon 13
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 13
ATTTGGTGGTGTGTTACTTGCTATGTGTACAAATGACTTCATTTGCTTTTATGATTGGGTGGAATGCAGATTGATACGTCGAATTGATGTCAATGTGAAGgtaatggaatttgttaccttattatttcaaacctttttttacattcatgccatttgaaatgttgtgccactcaaaacatgtttctttgtgtag--------------
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TTATGGAGGGGCACTTCTGGCGATATGCTCAAATGACTTCATTTGTTTTTATGACTGGGCTGAGTGCAGGTTGATTCGGCGGATTGATGTCAATGTCAAGgca----------------tgttctcaaaaagcttacttcacaattaccaggttttggccacagagaaactaatagttcatttctttgggtggtttcaatatttcag
upper sequence: GRMZM2G124886_T01 (Zea mays), 5'ss of exon 13
lower sequence: PP1S61_1V6.1 (Physcomitrella patens), 5'ss of exon 13
ATTTGGTGGTGTGTTACTTGCTATGTGTACAAATGACTTCATTTGCTTTTATGATTGGGTGGAATGCAGATTGATACGTCGAATTGATGTCAATGTGAAGgtaat----ggaatttgttacct-tattatt--tcaaacctttttttacattcatgccatttgaaatgttgtgccactcaaaacatgtttctttgtgtag------------------------------------------
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CTATGGCGGAACTTTGCTTGCAGTGCGAACAAATGAGTTCATATGTTTCTATGATTGGGTGGAATGCAGAGTTGTTCGGAGAATTGACGTTGTTGTGAAGgtaactaccgtattatgttattcgtgtttttacttaaacctgccatccttcgctgggctacgaagatgtgacttcacgaggatgacgaatctttttggctttttggtaactaccgtattatgttattcgtttctggttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31355222|gb|CD439579.1|CD439579EST: ATGATTGGGTGGAATGCAGATTGATACGCCGAATTGATGTCAATGTGAAG AATCTTTACTGGGCTGACAGTGGTGATTTAGTAACAATTGCAAGTGATACG
genomic: ATGATTGGGTGGAATGCAGATTGATACGTCGAATTGATGTCAATGTGAAGgtaatggaat ... ctttgtgtagAATCTTTACTGGGCTGACAGTGGTGATTTAGTAACAATTGCAAGTGATACG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTTGGTGGTGTGTTACTTGCTATGTGTACAAATGACTTCATTTGCTTTTATGATTGGGTGGAATGCAGATTGATACGTCGAATTGATGTCAATGTGAAGgtaatggaatttgttaccttattatttcaaacctttttttacattcatgccatttgaaatgttgtgccactcaaaacatgtttctttgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT