Sequence
atgc intronic sequence ATGC exonic sequenceAATCAGAAAAGTACAAAGCTGTTATCCTACGTATAGACAGCCCTGGTGGTGATGCTCTTGCTTCTGATCTgtaagttacgccttaggatttagtgatttgcttctcagcagcagcagcagcagagttttttcagtaacatattacgaattcttatttcaactag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G122843_T02 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os02g49570.1 (Oryza sativa), 5'ss of exon 8
AATCAGAAAAGTACAAAGCTGTTATCCTACGTATAGACAGCCCTGGTGGTGATGCTCTTGCTTCTGATCTgtaagttacgccttaggatttagtgatttgcttctcagcagcagcagcagcagagttttttcagtaacatattacgaattcttatttcaactag
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AGTCAGAAAAGTATAAAGCTGTTATCCTCCGTATAGACAGCCCTGGTGGTGATGCTCTTGCTTCTGATCTgtaagttatgcttcagatttcaccaatttatt-------------agcagcagagtttc----gttatgtattggttgttgttatttgaactag
upper sequence: GRMZM2G122843_T02 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA06G22870.1 (Glycine max), 5'ss of exon 9
AATCAGAAAAGTACAAAGCTGTTATCCTACGTATAGACAGCCCTGGTGGTGATGCTCTTGCTTCTGATCTgtaagttacgccttaggatttagtgatttgcttctcagcagcagcagcagcagagttttttcagtaacatattacgaattcttatttcaactag---------
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AGTCAAAAGAATTCAAGGCTGCTATCATCAGAATTGACAGTCCTGGAGGTGATGCTCTTGCTTCTGATTTgtaagttctgg-taaaatttcccctgttaattttatgttcaaaacttctatttagttatttaactag-aaattgttgattttctttgcg-ttggtttgaaatt
upper sequence: GRMZM2G122843_T02 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA04G31180.1 (Glycine max), 5'ss of exon 8
AATCAGAAAAGTACAAAGCTGTTATCCTACGTATAGACAGCCCTGGTGGTGATGCTCTTGCTTCTGATCTgtaagttacgccttaggatttagtgatttgcttctcagca-gcagcagcagcagagttttttcagtaacatattacgaattcttatttcaactag-------
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AATCAAAAAAATTTAAGGCTGCTATCATCAGAATTGACAGTCCTGGAGGTGATGCTCTTGCTTCTGATTTgtaagttctggtaaaatttcccctttgttaattatatgttcaaaactgttatttagttattt-aattagaaattgttgattttctttgca-ttggtttgaaa
upper sequence: GRMZM2G122843_T02 (Zea mays), 5'ss of exon 13
lower sequence: Vv17s0000g04690.t01 (Vitis vinifera), 5'ss of exon 4
AATCAGAAAAGTACAAAGCTGTTATCCTACGTATAGACAGCCCTGGTGGTGATGCTCTTGCTTCTGATCTgtaagttacgccttaggatttagtgatttgcttctcagcagcagcagcagcagagttttttcagtaacatattacgaattcttatttcaactag----------
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ATTCAAAAAGATATAAGGCTGTTATCATTCGCATTGACAGCCCTGGAGGTGATGCTCTTGCTTCTGATTTgtaagtgttgctata--ttctggctttatgata-taagtgatatttgatgaagtcctatttaagactcaagccagaaaagttcataa-aattatttataatgtaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9461487|gb|BE453757.1|BE453757EST: GTTATCCTACGTATAGACAGCCCTGGTGGTGATGCTCTTGCTTCTGATCT GATGTGGAGAGAAATCCGACTACTAGCCAACTCTAAACCTGTAGTTGCTTC
genomic: GTTATCCTACGTATAGACAGCCCTGGTGGTGATGCTCTTGCTTCTGATCTgtaagttacg ... tttcaactagGATGTGGAGAGAAATCCGACTTCTAGCCAACTCTAAACCTGTAGTTGCTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATCAGAAAAGTACAAAGCTGTTATCCTACGTATAGACAGCCCTGGTGGTGATGCTCTTGCTTCTGATCTgtaagttacgccttaggatttagtgatttgcttctcagcagcagcagcagcagagttttttcagtaacatattacgaattcttatttcaactag
- - - - - - - - - - - - - - - - - - - - - TGGTGG