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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGGTCTGCCACTACGCAAGTCAGAGCATGCATTCTACCTGGACTGGGCTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagccttgaaatgttttgagatacctgaaatctgtcttttataatctctactgacggccccttttcttggatag

Basic information

species Zea mays
transcript GRMZM2G112149_T03
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33102527|gb|CF062487.1|CF062487
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACACAG                         ATCCACACCCACATGTGCTACTCCAACTCCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32923431|gb|CF028243.1|CF028243
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|67041063|gb|CO467318.1|CO467318
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|67011067|gb|CO439816.1|CO439816
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32923437|gb|CF028249.1|CF028249
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32923111|gb|CF027923.1|CF027923
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32928142|gb|CF032954.1|CF032954
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|60344570|gb|DN211543.1|DN211543
EST:     CACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|67023444|gb|CO452193.1|CO452193
EST:     CTGTCCACTCTTTCAGGCTCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32846737|gb|CD986418.1|CD986418
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32921924|gb|CF026736.1|CF026736
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32923249|gb|CF028061.1|CF028061
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32923251|gb|CF028063.1|CF028063
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32920338|gb|CF025150.1|CF025150
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32922289|gb|CF027101.1|CF027101
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32922758|gb|CF027570.1|CF027570
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACAAAATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32923253|gb|CF028065.1|CF028065
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32920308|gb|CF025120.1|CF025120
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32922374|gb|CF027186.1|CF027186
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|488270|gb|T18851.1|T18851
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAA
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAA
EST: gi|32847081|gb|CD986762.1|CD986762
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32922467|gb|CF027279.1|CF027279
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32920444|gb|CF025256.1|CF025256
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32922184|gb|CF026996.1|CF026996
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32922607|gb|CF027419.1|CF027419
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCAAAA
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32922618|gb|CF027430.1|CF027430
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32922959|gb|CF027771.1|CF027771
EST:     CTGTCCACTCTTTCAGGATCGCCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32923075|gb|CF027887.1|CF027887
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32922801|gb|CF027613.1|CF027613
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTGCAGGACACCACCCAG                         ATCCACACCCACATGTGCT
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCT
EST: gi|32850050|gb|CD989731.1|CD989731
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32922825|gb|CF027637.1|CF027637
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32847544|gb|CD987225.1|CD987225
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32923373|gb|CF028185.1|CF028185
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32920357|gb|CF025169.1|CF025169
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACACAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32923094|gb|CF027906.1|CF027906
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32922892|gb|CF027704.1|CF027704
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32922932|gb|CF027744.1|CF027744
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32922966|gb|CF027778.1|CF027778
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32923171|gb|CF027983.1|CF027983
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32923230|gb|CF028042.1|CF028042
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCGGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32922490|gb|CF027302.1|CF027302
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32850703|gb|CD990384.1|CD990384
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32922150|gb|CF026962.1|CF026962
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|33094718|gb|CF054712.1|CF054712
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32923009|gb|CF027821.1|CF027821
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACACAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32850158|gb|CD989839.1|CD989839
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32922317|gb|CF027129.1|CF027129
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32922606|gb|CF027418.1|CF027418
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATGCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32922616|gb|CF027428.1|CF027428
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32920412|gb|CF025224.1|CF025224
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32923264|gb|CF028076.1|CF028076
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32922985|gb|CF027797.1|CF027797
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32850624|gb|CD990305.1|CD990305
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCTGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32846278|gb|CD985959.1|CD985959
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|67019045|gb|CO447794.1|CO447794
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32923021|gb|CF027833.1|CF027833
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|16927723|gb|BM080792.1|BM080792
EST:     TGTCCACTCTTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: TGTCCACTC-TTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32923275|gb|CF028087.1|CF028087
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32923113|gb|CF027925.1|CF027925
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32922341|gb|CF027153.1|CF027153
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATA
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32923541|gb|CF028353.1|CF028353
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32922529|gb|CF027341.1|CF027341
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32920361|gb|CF025173.1|CF025173
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|60348783|gb|DN215756.1|DN215756
EST:     CACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|15199045|gb|BI423625.1|BI423625
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32846795|gb|CD986476.1|CD986476
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32923291|gb|CF028103.1|CF028103
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32922215|gb|CF027027.1|CF027027
EST:     GTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACACCAAC
genomic: GTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|4753440|gb|AI657350.1|AI657350
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32922204|gb|CF027016.1|CF027016
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32922116|gb|CF026928.1|CF026928
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|32849099|gb|CD988780.1|CD988780
EST:     CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
EST: gi|4314681|gb|AI438588.2|AI438588
EST:     CTGTCCACTCTTTCAGGATCCCCAACTGCGGAGTCCAGGACCCCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC
genomic: CTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 30 (downstream exon)
Score: 16

GGAGGGTCTGCCACTACGCAAGTCAGAGCATGCATTCTACCTGGACTGGGCTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATCATCGACATGGATGCCGATGTGATCACGATCGAGAACTCCCGGTCTGACG


Block sizes: 49 (upstream exon), 29 (downstream exon)
Score: 4

GGAGGGTCTGCCACTACGCAAGTCAGAGCATGCATTCTACCTGGACTGGGCTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATCATCGACATGGATGCCGATGTGATCACGATCGAGAACTCCCGGTCTGACG


Block sizes: 49 (upstream exon), 40 (downstream exon)
Score: 27

GGAGGGTCTGCCACTACGCAAGTCAGAGCATGCATTCTACCTGGACTGGGCTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATCATCGACATGGATGCCGATGTGATCACGATCGAGAACTCCCGGTCTGACG


Block sizes: 49 (upstream exon), 41 (downstream exon)
Score: 141

GGAGGGTCTGCCACTACGCAAGTCAGAGCATGCATTCTACCTGGACTGGGCTGTCCACTCTTTCAGGATCACCAACTGCGGAGTCCAGGACACCACCCAGgtatattagc ... tcttggatagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATCATCGACATGGATGCCGATGTGATCACGATCGAGAACTCCCGGTCTGACG