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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGGGGTTCATGGAAGGATATTTGCAGCAGATACGGGCAGGCCTGTACCCGGCTCAGTGATGATAAAGGGCATTGATTCCAAGgtgagctcattttggctgcattaattatgttgtgctaaaacggattaactgaaaaaacgaatatagattgttgacatgagtttctctctctctccttgctatag

Basic information

species Zea mays
transcript GRMZM2G106683_T02
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G106683_T02 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os06g05240.1 (Oryza sativa), 5'ss of exon 12
----------------TCAGGGGTTCATGGAAGGATATTTGCAGCAGATACGGGCAGGCCTGTACCCGGCTCAGTGATGATAAAGGGCATTGATTCCAAGgtgagctcattttggctgcattaatta-tgttgtgctaaaacggattaactgaaaaaacgaatatagattgttgacatgagtttctctctctctccttgctatag
                 | || |||||||||||||||||||| |||||||| ||    ||| |||| |||||  ||| ||||||||| || | |||  |||| || | |||||||| || ||||  | |  ||   | ||  | |||    |       | || |  | |||  |  ||| | |   ||    |  ||  || | 
ATGGCTATTGTTTCAGACGGGAGTTCATGGAAGGATATTTGCGGCAGATACAGGTCATCCTATACCAGGCTCCCTGACGATAAAGGGTATCGGTTCTGAGgttagtttattttggcagcgttaaccaataatgatgtgaacagtattggtggcctt--tggatctgcactgtaaat-tgattgttggtcaaaatattt-ttaga-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60345819|gb|DN212792.1|DN212792
EST:     CGGGCAGGCCTGTACCCGGCTCAGTGATGATAAAGGGCATTGATTCCAAG                         GTAAGCGCGAGCAGCACTTTTGGAGATTACCATCGAATTGTTGCGCCTGGT
genomic: CGGGCAGGCCTGTACCCGGCTCAGTGATGATAAAGGGCATTGATTCCAAGgtgagctcat ... cttgctatagGTAAGCGCGAGCAGCACTTTTGGAGATTACCATCGAATTGTTGCGCCTGGT
EST: gi|5081117|gb|AI738163.1|AI738163
EST:     CGGGCAGGCCTGTACCCGGCTCAGTGATGATAAAGGGCATTGATTCCAAG                         GTAAGCGCGAGCAGCACTTTCGGAGATTACCATCGAATTGTTGCGCCTGGT
genomic: CGGGCAGGCCTGTACCCGGCTCAGTGATGATAAAGGGCATTGATTCCAAGgtgagctcat ... cttgctatagGTAAGCGCGAGCAGCACTTTTGGAGATTACCATCGAATTGTTGCGCCTGGT
EST: gi|78110109|gb|DV528524.1|DV528524
EST:     CGGGCAGGCCTGTACCCGGCTCAGTGATGATAAAGGGCATTGATTCCAAG                         GTAAGCGCGAGCAGCACTTTTGGAGATTACCATCGAATTGTTGCGCCTGGT
genomic: CGGGCAGGCCTGTACCCGGCTCAGTGATGATAAAGGGCATTGATTCCAAGgtgagctcat ... cttgctatagGTAAGCGCGAGCAGCACTTTTGGAGATTACCATCGAATTGTTGCGCCTGGT