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AGCGAGAGCCCAATATTTCTTCTTGACACATTTACCAACCTTATCGTTTACTATTCCTCAACTGCTGATCCTTCATTTCCTTTTCCTCCACCCCGTGACTgtaagtacatagtttttcattttcctgtgcatattttgagtagtacatatattctttcacaaaaaaagaattgctcaaatctccaaacaattttttttct...
species | Zea mays |
transcript | GRMZM2G106140_T01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CTATTCCTCAACTGCTGATCCTTCATTTCCTTTTCCTCCACCCCGTGACT GTCTTTTGAGAACAACAATCAATAAACTGAAGCAGGACAGATGTATAACCCEST: gi|60341248|gb|DN208221.1|DN208221
genomic: CTATTCCTCAACTGCTGATCCTTCATTTCCTTTTCCTCCACCCCGTGACTgtaagtacat ... taccatgtagGTCTTTTGAGAACAACAATCAATAAACTGAAGCAGGACAGATGTATAACCC
EST: CTATTCCTCAACTGCTGATCCTTCATTTCCTTTTCCTCCACCCCGTGACT GTCTTTTGAGAACAACAATCAATAAACTGAAGCAGGACAGATGTATAACCCEST: gi|94478603|gb|EB707561.1|EB707561
genomic: CTATTCCTCAACTGCTGATCCTTCATTTCCTTTTCCTCCACCCCGTGACTgtaagtacat ... taccatgtagGTCTTTTGAGAACAACAATCAATAAACTGAAGCAGGACAGATGTATAACCC
EST: CTTTTCCTCAACTGCTGATCCTTCATTTCCTTTTCCTCCACCCCGTGACT GTCTTTTGAGAACAACAATCAATAAACTGAAGCAGGACAGATGTATAACCCEST: gi|84977630|gb|DW476052.1|DW476052
genomic: CTATTCCTCAACTGCTGATCCTTCATTTCCTTTTCCTCCACCCCGTGACTgtaagtacat ... taccatgtagGTCTTTTGAGAACAACAATCAATAAACTGAAGCAGGACAGATGTATAACCC
EST: CTATTCCTCAACTGCTGATCCTTCATTTCCTTTTCCTCCACCCCGTGACT GTCTTTTGAGAACAACAATCAATAAACTGAAGCAGGACAGATGTATAACCCEST: gi|32835394|gb|CD975072.1|CD975072
genomic: CTATTCCTCAACTGCTGATCCTTCATTTCCTTTTCCTCCACCCCGTGACTgtaagtacat ... taccatgtagGTCTTTTGAGAACAACAATCAATAAACTGAAGCAGGACAGATGTATAACCC
EST: CTATTCCTCAACTGCTGATCCTTCATTTCCTTTTCCTCCACCCCGTGACT GTCTTTTGAGAACAACAATCAATAAACTGAAGCAGGACAGATGTATAACCCEST: gi|5917393|gb|AW054184.1|AW054184
genomic: CTATTCCTCAACTGCTGATCCTTCATTTCCTTTTCCTCCACCCCGTGACTgtaagtacat ... taccatgtagGTCTTTTGAGAACAACAATCAATAAACTGAAGCAGGACAGATGTATAACCC
EST: TGCTGATCCTTCATTTCCTTTTCCTCCACCCCGTGACT GTCTTTTGAGAACAACAATCAATAAACTGAAGCAGGACAGATGTATAACCCEST: gi|71314647|gb|DR793945.1|DR793945
genomic: TGCTGATCCTTCATTTCCTTTTCCTCCACCCCGTGACTgtaagtacat ... taccatgtagGTCTTTTGAGAACAACAATCAATAAACTGAAGCAGGACAGATGTATAACCC
EST: CTATTCCTCAACTGCTGATCCTTCATTTCCTTTTCCTCCACCCCGTGACT GTCTTTTGAGAACAACAATCAATAAACTGAAGCAGGACAGATGTATAACCCEST: gi|71299985|gb|DR786056.1|DR786056
genomic: CTATTCCTCAACTGCTGATCCTTCATTTCCTTTTCCTCCACCCCGTGACTgtaagtacat ... taccatgtagGTCTTTTGAGAACAACAATCAATAAACTGAAGCAGGACAGATGTATAACCC
EST: CTATTCCTCAACTGCTGATCCTTCATTTCCTTTTCCTCCACCCCGTGACT GTCTTTTGAGAACAACAATCAATAAACTGAAGCAGGACAGATGTATAACCCEST: gi|148946574|gb|EC887854.2|EC887854
genomic: CTATTCCTCAACTGCTGATCCTTCATTTCCTTTTCCTCCACCCCGTGACTgtaagtacat ... taccatgtagGTCTTTTGAGAACAACAATCAATAAACTGAAGCAGGACAGATGTATAACCC
EST: CTATTCCTCAACTGCTGATCCTTCATTTCCTTTTCCTCCACCCCGTGACT GTCTTTTGAGAACAACAATCAATAAACTGAAGCAGGACAGATGTATAACCCEST: gi|116823383|gb|EC866904.1|EC866904
genomic: CTATTCCTCAACTGCTGATCCTTCATTTCCTTTTCCTCCACCCCGTGACTgtaagtacat ... taccatgtagGTCTTTTGAGAACAACAATCAATAAACTGAAGCAGGACAGATGTATAACCC
EST: CTATTCCTCAACTGCTGATCCTTCATTTCCTTTTCCTCCACCCCGTGACT GTCTTTTGAGAACAACAATCAATAAACTGAAGCAGGACAGATGTATAACCCEST: gi|149070988|gb|EE159393.2|EE159393
genomic: CTATTCCTCAACTGCTGATCCTTCATTTCCTTTTCCTCCACCCCGTGACTgtaagtacat ... taccatgtagGTCTTTTGAGAACAACAATCAATAAACTGAAGCAGGACAGATGTATAACCC
EST: CTATTCCTCAACTGCTGATCCTTCATTTCCTTTTCCTCCACCCCGTGACT GTCTTTTGAGAACAACAATCAATAAACTGAAGCAGGACAGATGTATAACCC
genomic: CTATTCCTCAACTGCTGATCCTTCATTTCCTTTTCCTCCACCCCGTGACTgtaagtacat ... taccatgtagGTCTTTTGAGAACAACAATCAATAAACTGAAGCAGGACAGATGTATAACCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCGAGAGCCCAATATTTCTTCTTGACACATTTACCAACCTTATCGTTTACTATTCCTCAACTGCTGATCCTTCATTTCCTTTTCCTCCACCCCGTGACTgtaagtacatagtttttcattttcctgtgcatattttgagtagtacatatattctttcacaaaaaaagaattgctcaaatctccaaacaattttttttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaaaa