1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CATCGGTGTCTCACTCTTCCTGGGTTTATCTATACCAGAGTACTTCTCTAGGTATTCCACAAGTTCTCAACAAGGCCCAGCGCACACAAAAGCTGGATGGgttcgtatttttctctatgtacttcaaaattcaaattccaacttaaacttagctcccagcgaaaagaagaaaacatctagcatgatatagtaactcgaagctgatgcattgtatactgttaaagctgagtttgaagtgttgtgcattttgtttgtttgttgcag
species | Zea mays |
transcript | GRMZM2G100484_T01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: GGTATTCCACAAGTTCTCAACAAGGCCCAGCGCACACAAAAGCTGGATGG TTCAATGACTACATCAACACTAGCTTCTCATCACCACCCGCCGTCGCCCTCEST: gi|50334184|gb|CO529310.1|CO529310
genomic: GGTATTCCACAAGTTCTCAACAAGGCCCAGCGCACACAAAAGCTGGATGGgttcgtattt ... tttgttgcagTTCAATGACTACATCAACACTAGCTTCTCATCACCACCCGCCGTCGCCCTC
EST: GGTATTCCACAAGTTCTCAACAAGGCCCAGCGCATACAAAAGCTGGATGG TTCAATGACTACATCAACACTAGCTTCTCATCACCACCCGCCGTCGCCCTCEST: gi|166541115|gb|EG070021.1|EG070021
genomic: GGTATTCCACAAGTTCTCAACAAGGCCCAGCGCACACAAAAGCTGGATGGgttcgtattt ... tttgttgcagTTCAATGACTACATCAACACTAGCTTCTCATCACCACCCGCCGTCGCCCTC
EST: GGTATTCGACAAGTTCTCAACAAGGCCCAGCGCACACAAAAGCTGGATGG TTCAATGACTACATCAACACTAGCTEST: gi|9461889|gb|BE453955.1|BE453955
genomic: GGTATTCCACAAGTTCTCAACAAGGCCCAGCGCACACAAAAGCTGGATGGgttcgtattt ... tttgttgcagTTCAATGACTACATCAACACTAGCT
EST: GGTATTCCACAAGTTCTCACCAAGGCCCAGCGCACACAAAAGCTGGATGG TTCAATGACTACATCAACACTAGCTTCTCATCACCACCCGCCGTCGCCCTCEST: gi|78086984|gb|DV515377.1|DV515377
genomic: GGTATTCCACAAGTTCTCAACAAGGCCCAGCGCACACAAAAGCTGGATGGgttcgtattt ... tttgttgcagTTCAATGACTACATCAACACTAGCTTCTCATCACCACCCGCCGTCGCCCTC
EST: GGTATTCCACAAGTTCTCAACAAGGCCCAGCGCACACAAAAGCTGGATGG TTCAATGACTACATCAACACTAGCTTTTCATCACCACCCGCCGTCGCCCTCEST: gi|60398289|gb|DN231105.1|DN231105
genomic: GGTATTCCACAAGTTCTCAACAAGGCCCAGCGCACACAAAAGCTGGATGGgttcgtattt ... tttgttgcagTTCAATGACTACATCAACACTAGCTTCTCATCACCACCCGCCGTCGCCCTC
EST: GGTATTCCACAAGTTCTCAACAAGGCCCAGCGCACACAAAAGCTGGATGG TTCAATGACTACATCAACACTAGCTTCTCATCACCACCCGCCGTCGCCCTCEST: gi|50334185|gb|CO529311.1|CO529311
genomic: GGTATTCCACAAGTTCTCAACAAGGCCCAGCGCACACAAAAGCTGGATGGgttcgtattt ... tttgttgcagTTCAATGACTACATCAACACTAGCTTCTCATCACCACCCGCCGTCGCCCTC
EST: GGTATTCCACAAGTTCTCAACAAGGCCCAGCGCATACAAAAGCTGGATGG TTCAATGACTACATCAACACTAGCTTCTCATCACCACCCGCCGTCGCCCTCEST: gi|211271038|gb|FL034395.1|FL034395
genomic: GGTATTCCACAAGTTCTCAACAAGGCCCAGCGCACACAAAAGCTGGATGGgttcgtattt ... tttgttgcagTTCAATGACTACATCAACACTAGCTTCTCATCACCACCCGCCGTCGCCCTC
EST: GGTATTCGACAAGTTCTCAACAAGGCCCAGCACACACAAAAGCTGGATGG TTCAATGACTACATCAACACTAGCTTCTCATCACCEST: gi|21626173|gb|BQ621094.1|BQ621094
genomic: GGTATTCCACAAGTTCTCAACAAGGCCCAGCGCACACAAAAGCTGGATGGgttcgtattt ... tttgttgcagTTCAATGACTACATCAACACTAGCTTCTCATCACC
EST: GGTATTCCACAAGTTCTCAACAAGGCCCAGCGCACACAAAAGCTGGATGG TTCAATGACTACATCAACACTAGCTTCTCATCACCACCCGCCGTCGCCCTCEST: gi|71770760|gb|DR968697.1|DR968697
genomic: GGTATTCCACAAGTTCTCAACAAGGCCCAGCGCACACAAAAGCTGGATGGgttcgtattt ... tttgttgcagTTCAATGACTACATCAACACTAGCTTCTCATCACCACCCGCCGTCGCCCTC
EST: GGTATTCCACAAGTTCTCAACAAGGCCCAGCGCACACAAAAGCTGGATGG TTCAATGACTACATCAACACTAGCTTCTCATCACCACCCGCCGTCGCCCTCEST: gi|9566277|gb|BE475786.1|BE475786
genomic: GGTATTCCACAAGTTCTCAACAAGGCCCAGCGCACACAAAAGCTGGATGGgttcgtattt ... tttgttgcagTTCAATGACTACATCAACACTAGCTTCTCATCACCACCCGCCGTCGCCCTC
EST: GGTATTCCACAAGTTCTCAACAAGGCCCAGCGCACACAAAAGCTGGATGG TTCAATGACTACATCAACACTAGCTTCTCATCACCACCCGCCGTCGCCCTCEST: gi|71430812|gb|DR811862.1|DR811862
genomic: GGTATTCCACAAGTTCTCAACAAGGCCCAGCGCACACAAAAGCTGGATGGgttcgtattt ... tttgttgcagTTCAATGACTACATCAACACTAGCTTCTCATCACCACCCGCCGTCGCCCTC
EST: GGTATTCCACAAGTTCTCAACAAGGCCCAGCGCACACAAAAGCTGGATGG TTCAATGACTACATCAACACTAGCTTCTCATCACCACCCGCCGTCGCCCTC
genomic: GGTATTCCACAAGTTCTCAACAAGGCCCAGCGCACACAAAAGCTGGATGGgttcgtattt ... tttgttgcagTTCAATGACTACATCAACACTAGCTTCTCATCACCACCCGCCGTCGCCCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATCGGTGTCTCACTCTTCCTGGGTTTATCTATACCAGAGTACTTCTCTAGGTATTCCACAAGTTCTCAACAAGGCCCAGCGCACACAAAAGCTGGATGGgttcgtatttttctctatgtacttcaaaattcaaattccaacttaaacttagctcccagcgaaaagaagaaaacatctagcatgatatagtaactcgaagctgatgcattgtatactgttaaagctgagtttgaagtgttgtgcattttgtttgtttgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA