Sequence
atgc intronic sequence ATGC exonic sequenceACTTTCTGGAGCTGGCTCTTCAGTTTGGCATGATCATGATGTTTGCCTGTGCATTTCCATTGATATTCTGCTTTGCAGCTCTGgtatggatctctatcactaaatcactaatgcactatgttgtttagcctctcttgtgtttgttgctttgatgtaactctgttaatgttgttgtgaactacttggactacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G091494_T02 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os01g51040.1 (Oryza sativa), 5'ss of exon 13
ACTTTCTGGAGCTGGCTCTTCAGTTTGGCATGATCATGATGTTTGCCTGTGCATTTCCATTGATATTCTGCTTTGCAGCTCTGgtatggatctctatcactaaatcactaatgcactatgttgtttagcctctcttgtgtttgttgctttgatgtaactc-tgttaatgttgttgtgaactacttggactacag-------------------------
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ATTTTCTTGAGCTAACTCTTCAGTTTGGGATGATCATGATGTTTGCTTGTGCATTTCCGTCGATATTCTGCTTTGCTGCTCTGgtatgtggttc-atcac--agctatttgtgttctctctcttcttgtgtccttccctcttgtcgagcgcatgccatacatgtgtgttcttgtttgatttgtgtgtgctaaacttatcttaaattattttcatgacag
upper sequence: GRMZM2G091494_T02 (Zea mays), 5'ss of exon 13
lower sequence: Vv09s0002g02590.t01 (Vitis vinifera), 5'ss of exon 13
ACTTTCTGGAGCTGGCTCTTCAGTTTGGCATGATCATGATGTTTGCCTGTGCATTTCCATTGATATTCTGCTTTGCAGCTCTGgtatggatctctatcactaaatcactaatgcactatgttgtttagcctctcttgtgtttgttgctttgatgtaactctgttaatgttgttgtgaactacttggactacag
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ACTTTCTGGAGTTGGCGTTGCAGTTTGGAATGATTATGATGTTTGCCTGTGCCTTCCCCCTTGCATTTGCCTTTGCGGCATTGgtaaataattcttttagtg---ctcccttacaccacagtgcagagt-tgttttgaatgtcaaaagtacatg-aaatctga-agttttgtc-caaacaagttgtgcag---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|89253164|gb|DY624950.1|DY624950EST: TCATGATGTTTGCCTGTGCATTTCCATTGATATTCTGCTTTGCAGCTCTG AACAATGTTACTGAAATCAGAGCAGATGCATTAAAGTTGCTAGTCATGTTG
genomic: TCATGATGTTTGCCTGTGCATTTCCATTGATATTCTGCTTTGCAGCTCTGgtatggatct ... tggactacagAACAATGTTACTGAAATCAGAGCAGATGCATTAAAGTTGCTAGTCATGTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTTTCTGGAGCTGGCTCTTCAGTTTGGCATGATCATGATGTTTGCCTGTGCATTTCCATTGATATTCTGCTTTGCAGCTCTGgtatggatctctatcactaaatcactaatgcactatgttgtttagcctctcttgtgtttgttgctttgatgtaactctgttaatgttgttgtgaactacttggactacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC