1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
ATACTCTGAGGATCAGCTTGAGTTGGTCTTAGAAGCCTGCGAAAGGATGAATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAGgcaagtcggttcaactctctgcaagtttgtttagccccgcatttctcacatggaacttagtttgataaagtcagggtttcttcagcatgatctcaggatcccccccaaaagcatcgctgtcagtaaccaaacacttgaatgacttccgaacgttttccttatcttggtttattttcag
species | Zea mays |
transcript | GRMZM2G090087_T02 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAG GATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCGEST: gi|211120257|gb|FL200678.1|FL200678
genomic: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAGgcaagtcggt ... ttattttcagGATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCG
EST: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAG GATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCGEST: gi|67020094|gb|CO448843.1|CO448843
genomic: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAGgcaagtcggt ... ttattttcagGATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCG
EST: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAG GATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCGEST: gi|27769727|gb|CB042906.1|CB042906
genomic: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAGgcaagtcggt ... ttattttcagGATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCG
EST: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAG GATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCGEST: gi|6827469|gb|AW331112.1|AW331112
genomic: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAGgcaagtcggt ... ttattttcagGATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCG
EST: ATGCGCATCTGACGGCTGCAGTTGTCTCGAACGACCCGCTATTCCTGCAG GATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCGEST: gi|18659076|gb|BM500142.1|BM500142
genomic: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAGgcaagtcggt ... ttattttcagGATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCG
EST: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAG GATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATEST: gi|27576018|gb|CA998712.1|CA998712
genomic: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAGgcaagtcggt ... ttattttcagGATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAAT
EST: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAG GATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCGEST: gi|30088118|gb|CB886323.1|CB886323
genomic: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAGgcaagtcggt ... ttattttcagGATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCG
EST: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAG GATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCGEST: gi|24773212|gb|CA408466.1|CA408466
genomic: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAGgcaagtcggt ... ttattttcagGATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCG
EST: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAG GATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATEST: gi|29544968|gb|CB605146.1|CB605146
genomic: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAGgcaagtcggt ... ttattttcagGATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAAT
EST: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAG GATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCGEST: gi|28422820|gb|CB251998.1|CB251998
genomic: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAGgcaagtcggt ... ttattttcagGATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCG
EST: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAG GATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCGEST: gi|4966653|gb|AI691509.1|AI691509
genomic: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAGgcaagtcggt ... ttattttcagGATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCG
EST: TGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAG GATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCGEST: gi|67025872|gb|CO454621.1|CO454621
genomic: TGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAGgcaagtcggt ... ttattttcagGATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCG
EST: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAG GATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCGEST: gi|67023454|gb|CO452203.1|CO452203
genomic: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAGgcaagtcggt ... ttattttcagGATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCG
EST: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAG GATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCG-AATTCGAGCGEST: gi|37380563|gb|CF627102.1|CF627102
genomic: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAGgcaagtcggt ... ttattttcagGATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCG
EST: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAG GATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCGEST: gi|27521928|gb|CA989034.1|CA989034
genomic: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAGgcaagtcggt ... ttattttcagGATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCG
EST: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAG GATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCGEST: gi|30306480|gb|CD001153.1|CD001153
genomic: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAGgcaagtcggt ... ttattttcagGATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCG
EST: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAG GATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCGEST: gi|60340281|gb|DN207254.1|DN207254
genomic: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAGgcaagtcggt ... ttattttcagGATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCG
EST: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAG GATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCGEST: gi|67018698|gb|CO447447.1|CO447447
genomic: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAGgcaagtcggt ... ttattttcagGATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCG
EST: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAG GATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCGEST: gi|211507628|gb|FL212141.1|FL212141
genomic: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAGgcaagtcggt ... ttattttcagGATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCG
EST: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAG GATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCGEST: gi|67014372|gb|CO443121.1|CO443121
genomic: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAGgcaagtcggt ... ttattttcagGATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCG
EST: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAG GATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCGEST: gi|211301793|gb|FL438947.1|FL438947
genomic: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAGgcaagtcggt ... ttattttcagGATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCG
EST: ATGCGCATCTGACAGCTGCAGTTGTCTMAAACGACCCGCTATTCCTGCAG GATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCGEST: gi|60349947|gb|DN216920.1|DN216920
genomic: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAGgcaagtcggt ... ttattttcagGATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCG
EST: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAG GATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCGEST: gi|211342162|gb|FL434432.1|FL434432
genomic: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAGgcaagtcggt ... ttattttcagGATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCG
EST: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAG GATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCGEST: gi|71440457|gb|DR821507.1|DR821507
genomic: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAGgcaagtcggt ... ttattttcagGATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCG
EST: CTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAG GATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCGEST: gi|211507626|gb|FL212139.1|FL212139
genomic: CTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAGgcaagtcggt ... ttattttcagGATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCG
EST: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAG GATSTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCG
genomic: ATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAGgcaagtcggt ... ttattttcagGATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACTCTGAGGATCAGCTTGAGTTGGTCTTAGAAGCCTGCGAAAGGATGAATGCGCATCTGACAGCTGCAGTTGTCTCAAACGACCCGCTATTCCTGCAGgcaagtcggttcaactctctgcaagtttgtttagccccgcatttctcacatggaacttagtttgataaagtcagggtttcttcagcatgatctcaggatcccccccaaaagcatcgctgtcagtaaccaaacacttgaatgacttccgaacgttttccttatcttggtttattttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG