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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTTAATTTGTCAGAACAAGATGCTGTTGGTCCAATCTTAATAAATCTCTTAGTAAGGCTGCGAAATCTTCAGgtaattatccggaacaagctttttggttttgctgttctaatgccatgatgcaggacaatatgcatgttagactatgtaattaggctgatccagcctacca...

Basic information

species Zea mays
transcript GRMZM2G086093_T01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G086093_T01 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os03g05330.1 (Oryza sativa), 5'ss of exon 24
GTCCTTAATTTGTCAGAACAAGATGCTGTTGGTCCAATCTTAATAAATCTCTTAGTAAGGCTGCGAAATCTTCAGgtaattatccggaacaagctttttggttttgctgttctaatgccatgatgcaggacaatatgcatgttagactatgtaattaggctgatccagcctacca-----
|| |||||| ||||||||||||||||  |||  ||| | ||||| ||||| ||||||||||| || ||||| |||||||| ||     |||||| |  ||   |    | ||  ||||  |  ||    |    ||  |||    || || |   |    | | |  || ||  |     
GTTCTTAATGTGTCAGAACAAGATGCCATTGACCCAGTTTTAATCAATCTTTTAGTAAGGCTACGCAATCTCCAGgtaatcatttatgacaagcatactgacat----gctcgcatgcattactgtttaatggcat-tatgcagaacgatttgcattactttaccatgcttattatggaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67021578|gb|CO450327.1|CO450327
EST:     CTGTTGGTCCAATCTTAATAAATCTCTTAGTAAGGCTGCGAAATCTTCAG                         GTCTCAATGAATACGAAAATGAGGTCCAATGCGTTTGCAGCTTATGGTGCT
genomic: CTGTTGGTCCAATCTTAATAAATCTCTTAGTAAGGCTGCGAAATCTTCAGgtaattatcc ... tgtgccacagGTCTCAATGAATACGAAAATGAGGTCCAATGCGTTTGCAGCTTATGGTGCT
EST: gi|67025348|gb|CO454097.1|CO454097
EST:     CTGTTGGTCCAATCTTAATAAATCTCTTAGTAAGGCTGCGAAATCTTCAG                         GTCTCAATGAATACGAAAATGAGGTCCAATGCGTTTGCAGCTTATGGTGCT
genomic: CTGTTGGTCCAATCTTAATAAATCTCTTAGTAAGGCTGCGAAATCTTCAGgtaattatcc ... tgtgccacagGTCTCAATGAATACGAAAATGAGGTCCAATGCGTTTGCAGCTTATGGTGCT