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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCGTTGGGCTGATCTTGATATAAACCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAGgtaattttctttatgatgatatgcaaatctttattatactcttcacttcttcagcatttcttatttagagattgaaataggtaatccagcacattcatga...

Basic information

species Zea mays
transcript GRMZM2G079308_T01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G079308_T01 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA05G08060.2 (Glycine max), 5'ss of exon 5
CCTCGTTGGGCTGATCTTGATATAAACCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAGgtaattttctttatgatgatatgcaaatct-ttattatactcttcacttcttcagc--atttcttatttagagattgaaataggtaatccagcacattcatga
||| | |||  |||||| ||||| || ||||||||||| ||||| || |||||||  |||||||| |||||| ||||||   |  |  ||| | ||||   |   || |   | | ||||| | |  |     | | |   |||||    ||                    
CCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACATTGGCTGGATTCTGGAGgtatttttct--gttcttgtattctaatcaactgcaatccatgttagttctttaaccaaaggactgtcttttgattgttgcag--------------------

upper sequence: GRMZM2G079308_T01 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA05G08060.3 (Glycine max), 5'ss of exon 5
-------------------------------CCTCGTTGGGCTGATCTTGATATAAACCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAGgtaattttctttatgatgatatgcaaatct-ttattatactcttcacttcttcagc--atttcttatttagagattgaaataggtaatccagcacattcatga
                               ||| | |||  |||||| ||||| || ||||||||||| ||||| || |||||||  |||||||| |||||| ||||||   |  |  ||| | ||||   |   || |   | | ||||| | |  |     | | |   |||||    ||                    
TTAGTTTACATAATGCATCTTCATTTTGCAGCCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACATTGGCTGGATTCTGGAGgtatttttct--gttcttgtattctaatcaactgcaatccatgttagttctttaaccaaaggactgtcttttgattgttgcag--------------------

upper sequence: GRMZM2G079308_T01 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA17G12940.2 (Glycine max), 5'ss of exon 6
CCTCGTTGGGCTGATCTTGATATAAACCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAGgtaattttctttatgatgatatgcaaatctttattatactcttcacttcttcagcatttcttatttagagattgaaataggtaatccagcacattcatga
 || | |||  |||||| ||||| || ||||||||||| ||||| || |||||||  |||||||| |||||| ||||||   |  |  ||| | ||||   | |  | || |   ||        ||  | |   |  || ||   |  |       |||         
TCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACATTGACTGGATTCTGGAGgtatttttct--gttcttgtattctaatcc--actgcagtccttgtttt------gttgttaaccaaaggactgtcctttgattgtttgcag--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87154305|gb|DY399094.1|DY399094
EST:     ATATAAACCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAG                         AGTGCACCGATTACTATTTTTGAGAATCATGAGCTGGCCAGCATTGTGCTG
genomic: ATATAAACCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAGgtaattttct ... tttgcctcagAGTGCACCGATTACTATTTTTGAGAATCATGAGCTGGCCAGCATTGTGCTG
EST: gi|148947966|gb|EC893465.2|EC893465
EST:     ATATAAACCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAG                         AGTGCACCGATTACTATTTTTGAGAATCATGAGCTGGCCAGCATTGTGCTG
genomic: ATATAAACCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAGgtaattttct ... tttgcctcagAGTGCACCGATTACTATTTTTGAGAATCATGAGCTGGCCAGCATTGTGCTG
EST: gi|211198985|gb|FL379479.1|FL379479
EST:     ATATAAACCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAG                         AGTGCACCGATTACTATTTTTGAGAATCATGAGCTGGCCAGCATTGTGCTG
genomic: ATATAAACCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAGgtaattttct ... tttgcctcagAGTGCACCGATTACTATTTTTGAGAATCATGAGCTGGCCAGCATTGTGCTG
EST: gi|148944069|gb|EC889154.2|EC889154
EST:     ATATAAACCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAG                         AGTGCACCGATTACTATTTTTGAGAATCATGAGCTGGCCAGCATTGTGCTG
genomic: ATATAAACCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAGgtaattttct ... tttgcctcagAGTGCACCGATTACTATTTTTGAGAATCATGAGCTGGCCAGCATTGTGCTG
EST: gi|89759410|gb|DY688253.1|DY688253
EST:     ATATAAACCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAG                         AGTGCACCGATTACTATTTTTGAGAATCATGAGCTGGCCAGCATTGTGCTG
genomic: ATATAAACCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAGgtaattttct ... tttgcctcagAGTGCACCGATTACTATTTTTGAGAATCATGAGCTGGCCAGCATTGTGCTG
EST: gi|21330083|gb|BQ485464.1|BQ485464
EST:     ATATAAACCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAG                         AGTGCACCGATTACTATTTTTGAGAATCATGAGCTGGCCAGCATTGTGCTG
genomic: ATATAAACCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAGgtaattttct ... tttgcctcagAGTGCACCGATTACTATTTTTGAGAATCATGAGCTGGCCAGCATTGTGCTG
EST: gi|78106093|gb|DV524511.1|DV524511
EST:     TCAATAATGTTAAATACATTGCGTGGATT-TTGAG                         AGTGCACCGATTACTATTTTTGAGAATCATGAGCTGGCCAGCATTGTGCTG
genomic: TCAATAATGTTAAATACATTGCGTGGATTCTTGAGgtaattttct ... tttgcctcagAGTGCACCGATTACTATTTTTGAGAATCATGAGCTGGCCAGCATTGTGCTG
EST: gi|32867853|gb|CF007535.1|CF007535
EST:     ATATAAACCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAG                         AGTGCACCGATTACTATTTTTGAGAATCATGAGCTGGCCAGCATTGTGCTG
genomic: ATATAAACCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAGgtaattttct ... tttgcctcagAGTGCACCGATTACTATTTTTGAGAATCATGAGCTGGCCAGCATTGTGCTG
EST: gi|32870399|gb|CF010081.1|CF010081
EST:     ATATAAACCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAG                         AGTGCACCGATTACTATTTTTGAGAATCATGAGCTGGCCAGCATTGTGCTG
genomic: ATATAAACCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAGgtaattttct ... tttgcctcagAGTGCACCGATTACTATTTTTGAGAATCATGAGCTGGCCAGCATTGTGCTG
EST: gi|7227656|gb|AW566297.1|AW566297
EST:     ATATAAACCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAG                         AGTGCACCGATTACTATTTTTGAGAATCATGAGCTGGCCAGCATTGTGCTG
genomic: ATATAAACCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAGgtaattttct ... tttgcctcagAGTGCACCGATTACTATTTTTGAGAATCATGAGCTGGCCAGCATTGTGCTG
EST: gi|6012678|gb|AW062115.1|AW062115
EST:     ATATAAACCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAG                         AGTGCACCGATTACTATTTTTGAGAATCATGAGCTGGCCAGCATTGTGCTG
genomic: ATATAAACCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAGgtaattttct ... tttgcctcagAGTGCACCGATTACTATTTTTGAGAATCATGAGCTGGCCAGCATTGTGCTG
EST: gi|6022624|gb|AW067436.1|AW067436
EST:     ATATAAACCAGCATGTCAATAATGTTAAATACATTGCATGGATTCTTGAG                         AGTGCACCGATTACTATTTTTGAGAATCATGAGCTGGCCAGCATTGTGCTG
genomic: ATATAAACCAGCATGTCAATAATGTTAAATACATTGCGTGGATTCTTGAGgtaattttct ... tttgcctcagAGTGCACCGATTACTATTTTTGAGAATCATGAGCTGGCCAGCATTGTGCTG