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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGACAGAGAAACATCTTGTGCAGCGATCCAAAGTGCTATTTGGGAGGTCTGCGGTGATCAGGGTGCACTGGGTTTGCTTGTGGATCTTCTCGGGGTCAAgtattcaatcctcctcttgtttacccgtcgatgtattttggaccatatagccgtccttggtctagcatcacgaacaacccacagatcacaacgttcccttttgcaag

Basic information

species Zea mays
transcript GRMZM2G078458_T01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G078458_T04 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os06g03676.1 (Oryza sativa), 5'ss of exon 14
AAGACAGAGAAACATCTTGTGCAGCGATCCAAAGTGCTATTTGGGAGGTCTGCGGTGATCAGGGTGCACTGGGTTTGCTTGTGGATCTTCTCGGGGTCAAgtattcaatcctcctcttgtttacccgtcgatgtattttggaccatatagccgtccttggtctagcatcacgaacaacccacagatcacaacgttcccttttgcaag
 |   |  |||        ||  | | |||  |||||||| ||||||||| | |||||| | || |||||| |||||||||||||||||||  | ||||||||    | || |  ||||   |    |||||||    || ||| | ||    |  ||  | | || |    || ||   |  |||||   | ||| ||||||||||
GATCTAATGAAGATAGAGATGATGAGCTCCGGAGTGCTATATGGGAGGTCAGTGGTGATAATGGAGCACTGAGTTTGCTTGTGGATCTTCTTAGAGTCAAgtaacacacccacaacttgagaaat--tcgatgt-cagtgtacc-tgta----ttttttctatggcgttgtcaataatttattgatcaagcccttctcttttgcaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74241323|gb|DT649237.1|DT649237
EST:     TGCGGTGATCAGGGTGCACTGGGTTTGCTTGTAGATCTTCTCGGGGTCAA                         AATGGCTGAACTTGAAGAGGGCTCTGGAACAGAAGCATCTGACGCCGAACT
genomic: TGCGGTGATCAGGGTGCACTGGGTTTGCTTGTGGATCTTCTCGGGGTCAAgtattcaatc ... cttttgcaagAATGGCTGAACTTGAAGAGGGCTCTGGAACAGAAGCATCTGACGCCGAACT
EST: gi|110940705|gb|EE160862.1|EE160862
EST:     TGCGGTGATCAGGGTGCACTGGGTTTGCTTGTGGATCTTCTCGGGGTCAA                         AATGGCTGAACTTGAAGAGGGCTCTGGAACAGAAGCATCTGACGCCGAACT
genomic: TGCGGTGATCAGGGTGCACTGGGTTTGCTTGTGGATCTTCTCGGGGTCAAgtattcaatc ... cttttgcaagAATGGCTGAACTTGAAGAGGGCTCTGGAACAGAAGCATCTGACGCCGAACT
EST: gi|211219812|gb|FL295368.1|FL295368
EST:     TGCGGTGATCAGGGTGCACTGGTTTTGCTTGTGGATCTTCTCGGGGTCAA                         AATGGCTGAACTTGAAGAGGGCTCTGGAACAGAAGCATCTGACGCCGAACT
genomic: TGCGGTGATCAGGGTGCACTGGGTTTGCTTGTGGATCTTCTCGGGGTCAAgtattcaatc ... cttttgcaagAATGGCTGAACTTGAAGAGGGCTCTGGAACAGAAGCATCTGACGCCGAACT
EST: gi|71766034|gb|DR963971.1|DR963971
EST:     TGCGGTGATCAGGGTGCACTGGGTTTGCTTGTGGATCTTCTCGGGGTCAA                         AATGGCTGAACTTGAAGAGGGCTCTGGAACAGAAGCATCTGACGCCGAACT
genomic: TGCGGTGATCAGGGTGCACTGGGTTTGCTTGTGGATCTTCTCGGGGTCAAgtattcaatc ... cttttgcaagAATGGCTGAACTTGAAGAGGGCTCTGGAACAGAAGCATCTGACGCCGAACT
EST: gi|148953146|gb|EE152627.2|EE152627
EST:     TGCGGTGATCAGGGTGCACTGGGTTTGCTTGTGGATCTTCTCGGGGTCAA                         AATGGCTGAACTTGAAGAGGGTTCTGGAACAGAAGCATCTGACGCCGAACT
genomic: TGCGGTGATCAGGGTGCACTGGGTTTGCTTGTGGATCTTCTCGGGGTCAAgtattcaatc ... cttttgcaagAATGGCTGAACTTGAAGAGGGCTCTGGAACAGAAGCATCTGACGCCGAACT
EST: gi|71761805|gb|DR959742.1|DR959742
EST:     TGCGGTGATCAGGGTGCACTGGGTTTGCTTGTGGATCTTCTCGGGGTCAA                         AATGGCTGAACTTGAAGAGGGTTCTGGAACAGAAGCATCTGACGCCGAACT
genomic: TGCGGTGATCAGGGTGCACTGGGTTTGCTTGTGGATCTTCTCGGGGTCAAgtattcaatc ... cttttgcaagAATGGCTGAACTTGAAGAGGGCTCTGGAACAGAAGCATCTGACGCCGAACT
EST: gi|86473471|gb|DY239841.1|DY239841
EST:     TGCGGTGATCAGGGTGCACTGGGTTTGCTTGTGGATCTTCTCGGGGTCAA                         AATGGCTGAACTTGAAGAGGGTTCTGGAACAGAAGCATCTGACGCCGAACT
genomic: TGCGGTGATCAGGGTGCACTGGGTTTGCTTGTGGATCTTCTCGGGGTCAAgtattcaatc ... cttttgcaagAATGGCTGAACTTGAAGAGGGCTCTGGAACAGAAGCATCTGACGCCGAACT