Sequence
atgc intronic sequence ATGC exonic sequenceATATCTTCTTGTGGGATGACCCTAAGCCTTCTTGCGGTTGCTGTTGTATTTTACATCAAGgtaagttgaacagaacataacagttctgctttcgcactctctgcaatagtaacgtattatttcggtgtctgtcatctcattgcactgagatgtttttctttcttgtcatgggttgttcgttttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G077546_T02 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os05g49270.1 (Oryza sativa), 5'ss of exon 13
ATATCTTCTTGTGGGATGACCCTAAGCCTTCTTGCGGTTGCTGTTGTATTTTACATCAAGgtaagtt------------gaacagaacataacagttctg-ctttcgcactctctgcaata--------gtaacgtattatttcggt------------gtctgtcatctcattgcactgagatgtttttctttcttgtcatgggttgttcgttttcag
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ATCTCTTCTGCTGGGATGACTCTAAGCCTCCTTGCAGTTGCTGTTGTATTTTTCCTCAAGgtaagttcctaccagtaaaaaagaaaagggaaaagtttcatctgttgcactatatgcaatattccatatatggcttatgaattttgcaatatatcacaggtctcttctgtcaatccactgaatattttcatattgttattgtgatttatttgttt-cag
upper sequence: GRMZM2G077546_T02 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os05g49260.1 (Oryza sativa), 5'ss of exon 13
ATATCTTCTTGTGGGATGACCCTAAGCCTTCTTGCGGTTGCTGTTGTATTTTACATCAAGgtaagttgaa--------cagaacataacagt-----------tctgctttcgcactctctgcaatag-------taacgtattatttcggtgtctgtcatctcattgcactgagatgtttttctttcttgtcatgggttgttcgttttcag
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ATCTCTACTGCTGGGATGACTCTAAGCCTTCTTGCAGTATCTGTTGTATTTTTTCTGGAGgtacattcagattttttccagtataccattgtgataaaaaaaatcatatgttgcagtctctttgatagcctacattgtcgcatggactcttcccctttctcctcagttcactca-atatttcaatattactacaatgattatttgttt-cagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|67014538|gb|CO443287.1|CO443287EST: GTGGGATGACCCTAAGCCTTCTTGCGGTTGCTGTTGTATTTTACATCAAG GATAATATTTCACATGATTCTGACATGCATAACATCTTAAGTATGGTGTCG
genomic: GTGGGATGACCCTAAGCCTTCTTGCGGTTGCTGTTGTATTTTACATCAAGgtaagttgaa ... tcgttttcagGATAATATTTCACATGATTCTGACATGCATAACATCTTAAGTATGGTGTCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATATCTTCTTGTGGGATGACCCTAAGCCTTCTTGCGGTTGCTGTTGTATTTTACATCAAGgtaagttgaacagaacataacagttctgctttcgcactctctgcaatagtaacgtattatttcggtgtctgtcatctcattgcactgagatgtttttctttcttgtcatgggttgttcgttttcag
- - - - - - - - - - - - - - - - - - - GCTGTT