1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GTCTATAATGATTCTAAGACTTTGTTCAACATGAAGAGCACATTTGACAGAACATCTCGTAGTGGACCCAAGgtaagttctgattacataagaaaaattcttgtgaaatagctctctttcgtgagtagcatttacattgtatttgggatttcttgacatttctcttgggatg...
species | Zea mays |
transcript | GRMZM2G077299_T01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TGTTCAACATGAAGAGCACATTTGACAGAACATCTCGTAGTGGACCCAAG GCTTTTGTAAGTGAGTEST: gi|213170538|gb|FM181869.1|FM181869
genomic: TGTTCAACATGAAGAGCACATTTGACAGAACATCTCGTAGTGGACCCAAGgtaagttctg ... tcaaatgcagGCTTTTGTAAGTGAGT
EST: TGTTCAACATGAAGAGCACATTTGACAGAACATCTCGTAGTGGACCCAAG GCTTTTGTAAGTGAGTACGTTGTTTGGAGAGGTGATGCAGGTAGAGGAAGTEST: gi|116814377|gb|EC856917.1|EC856917
genomic: TGTTCAACATGAAGAGCACATTTGACAGAACATCTCGTAGTGGACCCAAGgtaagttctg ... tcaaatgcagGCTTTTGTAAGTGAGTACGCTGTTTGGAGAGGTGATGCAGGTAGAGGAAGT
EST: TGTTCAACATGAAGAGCACATTTGACAGAACATCTCGTAGTGGACCCAAG GCTTTTGTAAGTGAGTACGCTGTTTGGAGAGGTGATGCAGGTAGAGGAAGTEST: gi|12045517|gb|BF727656.1|BF727656
genomic: TGTTCAACATGAAGAGCACATTTGACAGAACATCTCGTAGTGGACCCAAGgtaagttctg ... tcaaatgcagGCTTTTGTAAGTGAGTACGCTGTTTGGAGAGGTGATGCAGGTAGAGGAAGT
EST: TGTTCAACATGAAGAGCACATTTGACAGAACATCTCGTAGTGGACCCAAG GCTTTTGTAAGTGAGTACGCTGTTTGGAGAGGTGATGCAGGTAGAGGAAGTEST: gi|32846175|gb|CD985856.1|CD985856
genomic: TGTTCAACATGAAGAGCACATTTGACAGAACATCTCGTAGTGGACCCAAGgtaagttctg ... tcaaatgcagGCTTTTGTAAGTGAGTACGCTGTTTGGAGAGGTGATGCAGGTAGAGGAAGT
EST: TGTTCAACATGAAGAGCACATTTGACAGAACATCTCGTAGTGGACCCAAG GCTTTTGTAAGTGAGTEST: gi|32865761|gb|CF005443.1|CF005443
genomic: TGTTCAACATGAAGAGCACATTTGACAGAACATCTCGTAGTGGACCCAAGgtaagttctg ... tcaaatgcagGCTTTTGTAAGTGAGT
EST: TGTTCAACATGAAGAGCACATTTGACAGAACATCTCGTAGTGGACCCAAG GCTTTTGTAAGTGAGTACGCTGTTTGGAGAGGTGATGCAGGTAGAGGAAGTEST: gi|32846927|gb|CD986608.1|CD986608
genomic: TGTTCAACATGAAGAGCACATTTGACAGAACATCTCGTAGTGGACCCAAGgtaagttctg ... tcaaatgcagGCTTTTGTAAGTGAGTACGCTGTTTGGAGAGGTGATGCAGGTAGAGGAAGT
EST: TGTTCAACATGAAGAGCACATTTGACAGAACATCTCGTAGTGGACCCAAG GCTTTTGTAAGTGAGTAEST: gi|17970148|gb|BM276913.1|BM276913
genomic: TGTTCAACATGAAGAGCACATTTGACAGAACATCTCGTAGTGGACCCAAGgtaagttctg ... tcaaatgcagGCTTTTGTAAGTGAGTA
EST: TGTTCAACATGAAGAGCACATTTGACAGAACATCTCGTAGTGGACCCAAG GCTTTTGTAAGTGAGTACGCTGTTTGGAGAGGTGATGCAGGTAGAGGAAGTEST: gi|32835529|gb|CD975207.1|CD975207
genomic: TGTTCAACATGAAGAGCACATTTGACAGAACATCTCGTAGTGGACCCAAGgtaagttctg ... tcaaatgcagGCTTTTGTAAGTGAGTACGCTGTTTGGAGAGGTGATGCAGGTAGAGGAAGT
EST: TGTTCAACATGAAGAGCACATTTGACAGAACATCTCGTAGTGGACCCAAG GCTTTTGTAAGTGAGTEST: gi|22489289|gb|BU049212.1|BU049212
genomic: TGTTCAACATGAAGAGCACATTTGACAGAACATCTCGTAGTGGACCCAAGgtaagttctg ... tcaaatgcagGCTTTTGTAAGTGAGT
EST: TGTTCAACATGAAGAGCACATTTGACAGAACATCTCGTAGTGGACCCAAG GCTTTTGTAAGTGAGTACGCTGTTTGGAGAGGTGATGCAGGTAGAGGAAGTEST: gi|71441725|gb|DR822775.1|DR822775
genomic: TGTTCAACATGAAGAGCACATTTGACAGAACATCTCGTAGTGGACCCAAGgtaagttctg ... tcaaatgcagGCTTTTGTAAGTGAGTACGCTGTTTGGAGAGGTGATGCAGGTAGAGGAAGT
EST: TGTTCAACATGAAGAGCACATTTGACAGAACATCTCGTAGTGGACCCAAG GCTTTTGTAAGTGAGTACGCTGTTTGGAGAGGTGATGCAGGTAGAGGAAGTEST: gi|32846588|gb|CD986269.1|CD986269
genomic: TGTTCAACATGAAGAGCACATTTGACAGAACATCTCGTAGTGGACCCAAGgtaagttctg ... tcaaatgcagGCTTTTGTAAGTGAGTACGCTGTTTGGAGAGGTGATGCAGGTAGAGGAAGT
EST: TGTTCAACATGAAGAGCACATTTGACAGAACATCTCGTAGTGGACCCAAG GTTTTTGTAAGTGAGTA
genomic: TGTTCAACATGAAGAGCACATTTGACAGAACATCTCGTAGTGGACCCAAGgtaagttctg ... tcaaatgcagGCTTTTGTAAGTGAGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTATAATGATTCTAAGACTTTGTTCAACATGAAGAGCACATTTGACAGAACATCTCGTAGTGGACCCAAGgtaagttctgattacataagaaaaattcttgtgaaatagctctctttcgtgagtagcatttacattgtatttgggatttcttgacatttctcttgggatg
- - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaaa