1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACGgtatggtgttccgtattccacatccttactattttggtcagcatcgtggttatctgaaagcatgtatatttggtgtttttag
species | Zea mays |
transcript | GRMZM2G069916_T01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: GGAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACG ATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGAEST: gi|32833686|gb|CD973364.1|CD973364
genomic: GGAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACGgtatggtgtt ... gtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGA
EST: AAGCTGAAGATGATAGACG ATCAAGAGAGCACAGCAAGGATCGCATCGGCCGGTCGTCCAGGGATAGAGAEST: gi|88757903|gb|DY542044.1|DY542044
genomic: AAGCTGAAGATGATAGACGgtatggtgtt ... gtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGA
EST: GGAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACG ATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGAEST: gi|83278840|gb|DV942848.1|DV942848
genomic: GGAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACGgtatggtgtt ... gtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGA
EST: GGAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACG ATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGAEST: gi|211016391|gb|FL363397.1|FL363397
genomic: GGAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACGgtatggtgtt ... gtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGA
EST: GAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACG ATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGAEST: gi|149000972|gb|EE038212.2|EE038212
genomic: GAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACGgtatggtgtt ... gtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGA
EST: GGAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACG ATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGAEST: gi|71312970|gb|DR793007.1|DR793007
genomic: GGAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACGgtatggtgtt ... gtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGA
EST: GAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACG ATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGAEST: gi|88756296|gb|DY540437.1|DY540437
genomic: GAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACGgtatggtgtt ... gtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGA
EST: GGAGCAGGGAAATAAAAGGGAGACCGGGCAAAGCTGAAGATGATAGACG ATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGA
genomic: GGAGCAGAGAAATAAAA-GGAGACCGGGCAAAGCTGAAGATGATAGACGgtatggtgtt ... gtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACGgtatggtgttccgtattccacatccttactattttggtcagcatcgtggttatctgaaagcatgtatatttggtgtttttag
- - - - - - - AAGGAG
- - - - - - - AGGAGA
- - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - AAGATG