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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATATCCTGATAGCCTCGAGAAAGCAGCAGAACTGGCAGTTTCCAGTTTGCAGgtataagagtcatgcgcactgttgttacgctttctgtatgctgaatttaggcagcatgtagtagcgctactgatattcggttacctatttcatgggtttt...

Basic information

species Zea mays
transcript GRMZM2G069758_T02
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18166331|gb|BM336170.1|BM336170
EST:     ATCCTGATAGCCTCGAGAAAGCGGCAGAACTGGCAGTTTCCAGTTTGCAG                         GCACTTCTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCA
genomic: ATCCTGATAGCCTCGAGAAAGCAGCAGAACTGGCAGTTTCCAGTTTGCAGgtataagagt ... acttctgcagGCACTTCTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCA
EST: gi|33097992|gb|CF057952.1|CF057952
EST:     ATCCTGATAGCCTCGAGAAAGCGGCAGAACTGGCAGTTTCCAGTTTGCAG                         GCACTTCTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCA
genomic: ATCCTGATAGCCTCGAGAAAGCAGCAGAACTGGCAGTTTCCAGTTTGCAGgtataagagt ... acttctgcagGCACTTCTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCA
EST: gi|32823768|gb|CD963490.1|CD963490
EST:     ATCCTGATAGCCTCGAGAAAGCGGCAGAACTGGCAGTTTCCAGTTTGCAG                         GCACTTCTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCA
genomic: ATCCTGATAGCCTCGAGAAAGCAGCAGAACTGGCAGTTTCCAGTTTGCAGgtataagagt ... acttctgcagGCACTTCTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCA
EST: gi|33096068|gb|CF056062.1|CF056062
EST:     ATCCTGATAGCCTCGAGAAAGCGGCAGAACTGGCAGTTTCCAGTTTGCAG                         GCACTTCTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCA
genomic: ATCCTGATAGCCTCGAGAAAGCAGCAGAACTGGCAGTTTCCAGTTTGCAGgtataagagt ... acttctgcagGCACTTCTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCA
EST: gi|8102609|gb|AW927412.1|AW927412
EST:     ATCCTGATAGCCTCGAGAAAGCGGCAGAACTGGCAGTTTCCAGTTTGCAG                         GCACTTTTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCA
genomic: ATCCTGATAGCCTCGAGAAAGCAGCAGAACTGGCAGTTTCCAGTTTGCAGgtataagagt ... acttctgcagGCACTTCTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCA
EST: gi|17931888|gb|BM268848.1|BM268848
EST:     ATCCTGATAGCCTCGAGAAAGCAGCAGAACTGGCAGTTTCCAGTTTGCAG                         GCACTTCTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCA
genomic: ATCCTGATAGCCTCGAGAAAGCAGCAGAACTGGCAGTTTCCAGTTTGCAGgtataagagt ... acttctgcagGCACTTCTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCA
EST: gi|67022839|gb|CO451588.1|CO451588
EST:     ATCCTGATAGCCTCGAGAAAGCGGCAGAACTGGCAGTTTCCAGTTTGCAG                         GCACTTCTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCA
genomic: ATCCTGATAGCCTCGAGAAAGCAGCAGAACTGGCAGTTTCCAGTTTGCAGgtataagagt ... acttctgcagGCACTTCTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCA
EST: gi|40303606|gb|CK347993.1|CK347993
EST:     ATCCTGATAGCCTCGAGAAAGCGGCAGAACTGGCAGTTTCCAGTTTGCAG                         GCACTTCTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCA
genomic: ATCCTGATAGCCTCGAGAAAGCAGCAGAACTGGCAGTTTCCAGTTTGCAGgtataagagt ... acttctgcagGCACTTCTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCA
EST: gi|16922789|gb|BM075781.1|BM075781
EST:     ATCCTGATAGCCTCGAGAAAGCAGCAGAACTGGCAGTTTCCAGTTTGCAG                         GCACTTCTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCA
genomic: ATCCTGATAGCCTCGAGAAAGCAGCAGAACTGGCAGTTTCCAGTTTGCAGgtataagagt ... acttctgcagGCACTTCTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCA