1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GCGACAGGTTGCTGATCCAGCAAGGCCTGCACGGACTCTGACCGGTGCTGTGAGGAGAGgtcagtacccctcctgcgctaccagaccacgcccttctggtggaaaaaaaaatccagccgccttggttcggtcctgatcagttaagctcaccgtgcag
species | Zea mays |
transcript | GRMZM2G069631_T01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TGCTGATCCAGCAAGGCCTGCACGGACTCTGACCGGTGCTGTGAGGAGAG GTGGAGAGAACACAAGCGTTGACGCCAGCGGAAACTCTTGCGACCTCTCAAEST: gi|16926667|gb|BM079735.1|BM079735
genomic: TGCTGATCCAGCAAGGCCTGCACGGACTCTGACCGGTGCTGTGAGGAGAGgtcagtaccc ... caccgtgcagGTGGAGAGAACACAAGCGTTGACGCCAGCGGAAACTCTTGCGACCTCTCAA
EST: TGCTGATCCAGCAAGGCCTGCACGGACTCTGACCGGTGCTGTGAGGAGAG GTGGAGAGAACACAAGCGTTGACGCCAGCGGAAACTCTTGCGACCTCTCAAEST: gi|60394838|gb|DN227707.1|DN227707
genomic: TGCTGATCCAGCAAGGCCTGCACGGACTCTGACCGGTGCTGTGAGGAGAGgtcagtaccc ... caccgtgcagGTGGAGAGAACACAAGCGTTGACGCCAGCGGAAACTCTTGCGACCTCTCAA
EST: TGCTGATCCAGCAAGGCCTGCACGGACTCTGACCGGTGCTGTGAGGAGAG GTGGAGAGAACACAAGCGTTGACGCCAGCGGAAACTCTTGCGACCTCTCAAEST: gi|149008174|gb|EE040364.2|EE040364
genomic: TGCTGATCCAGCAAGGCCTGCACGGACTCTGACCGGTGCTGTGAGGAGAGgtcagtaccc ... caccgtgcagGTGGAGAGAACACAAGCGTTGACGCCAGCGGAAACTCTTGCGACCTCTCAA
EST: TGCTGATCCAGCAAGGCCTGCACGGACTCTGACCGGTGCTGTGAGGAGAG GTGGAGAGAACACAAGCGTTGACGCCAGCGGAAACTCTTGCGACCTCTCAAEST: gi|148944603|gb|EC889733.2|EC889733
genomic: TGCTGATCCAGCAAGGCCTGCACGGACTCTGACCGGTGCTGTGAGGAGAGgtcagtaccc ... caccgtgcagGTGGAGAGAACACAAGCGTTGACGCCAGCGGAAACTCTTGCGACCTCTCAA
EST: CTGTGAGGAGAG GTGGAGAGAACACAAGCGTTGACGCCAGCGGAAACTCTTGCGACCTCTCAA
genomic: CTGTGAGGAGAGgtcagtaccc ... caccgtgcagGTGGAGAGAACACAAGCGTTGACGCCAGCGGAAACTCTTGCGACCTCTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGACAGGTTGCTGATCCAGCAAGGCCTGCACGGACTCTGACCGGTGCTGTGAGGAGAGgtcagtacccctcctgcgctaccagaccacgcccttctggtggaaaaaaaaatccagccgccttggttcggtcctgatcagttaagctcaccgtgcag
- - - - - GCTGAT
- - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA