Sequence
atgc intronic sequence ATGC exonic sequenceATGATACTGTCATTTGAACTCCCTTTTGCTTTAGTTCCACTCCTTAAATTCACCAGCAGCAAAACAAAGATGGGGCAGCATACAAATTCAATATTCgtgagtcattttgtcacagaatcgacagtaattaccttgaatttgcatagcaactcatctaacttgattgtcaaatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G069198_T02 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os06g46310.3 (Oryza sativa), 5'ss of exon 12
ATGATACTGTCATTTGAACTCCCTTTTGCTTTAGTTCCACTCCTTAAATTCACCAGCAGCAAAACAAAGATGGGGCAGCATACAAATTCAATATTCgtgagtcattttgtcacagaatcgacagtaattaccttgaatttgcatagcaactcatctaacttgattgtc------aaatgcag
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ATGATACTGTCATTTGAGCTTCCTTTTGCTCTAGTTCCACTCCTAAAATTCACAAGCAGCAGGACAAAAATGGGGCAGCACACAAATTCAAAAGCCgtaagttgttttccc-tagaatacataaatatatagcagcaatgccactatgacacatctgaaatgtttttttttcctgaatgcag
upper sequence: GRMZM2G069198_T02 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA15G00590.1 (Glycine max), 5'ss of exon 12
ATGATACTGTCATTTGAACTCCCTTTTGCTTTAGTTCCACTCCTTAAATTCACCAGCAGCAAAACAAAGATGGGGCAGCATACAAATTCAATATTCgtgagtcattttgt---cacagaatcgacagtaattaccttgaatttgcatagcaactcatctaacttgattgtcaaatg-cag------------------
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ATGATCTTATCATTTGAGCTTCCTTTTGCTTTGGTTCCACTCCTCAAGTTTACAAGCAGCAAAACCAAGATGGGGACACATGTCAACTCTACCATGgtaaatttttttggtaacatgaaatttgtagttgt-gcattgcaaccaaatagtaaattgatta-catatttgacaaaaatcagtagagaggtgctgttaga
upper sequence: GRMZM2G069198_T02 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA07G02680.1 (Glycine max), 5'ss of exon 11
ATGATACTGTCATTTGAACTCCCTTTTGCTTTAGTTCCACTCCTTAAATTCACCAGCAGCAAAACAAAGATGGGGCAGCATACAAATTCAATATTCgtgagtcattttgtcaca---gaatcgacagtaattaccttgaat---ttgcatagcaactcatctaacttgattgtcaaatgcag--------------
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ATGATCTTATCATTTGAGCTTCCTTTTGCTTTGATTCCACTCCTCAAGTTCACTAGCAGCAAAATCAAGATGGGAGAACATGTCAACTCAATCTCGgtaatttttttggtgacatgaaaattgaaacttgttacaaatagtaaattgattgccaacttcacaaatgttgtcaaaatatttagaatcattgtctgac
upper sequence: GRMZM2G069198_T02 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA13G44710.1 (Glycine max), 5'ss of exon 11
ATGATACTGTCATTTGAACTCCCTTTTGCTTTAGTTCCACTCCTTAAATTCACCAGCAGCAAAACAAAGATGGGGCAGCATACAAATTCAATATTCgtgagtcattttgt---cacagaatcgacagtaattaccttgaatttgcatagcaactcatctaacttgattgtcaaatg-cag------------------
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ATGATCTTATCATTTGAGCTTCCTTTTGCTTTGGTTCCACTCCTCAAGTTTACAAGCAGCAAAACCAAAATGGGGACACATGTCAACTCTACAATGgtaaatttttttggtaacatgaaacttatagtt-ctgcattgcaaccaaatagtaaattgatta-catgtttgacaaaaatcagtagagaggtgctgttaga
upper sequence: GRMZM2G069198_T02 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA08G23320.1 (Glycine max), 5'ss of exon 13
ATGATACTGTCATTTGAACTCCCTTTTGCTTTAGTTCCACTCCTTAAATTCACCAGCAGCAAAACAAAGATGGGGCAGCATACAAATTCAATATTCgtgagtcattttgtcaca---gaatcgaca----gtaattaccttgaatttgcatagcaactcatctaacttgattgtcaaatgcag--------------
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ATGATCCTATCATTTGAGCTTCCTTTTGCTTTGATTCCACTCCTCAAGTTCACTAGCAGCAAAATCAAGATGGGAGAACATGTCAACTCAATCACGgtaattttttttgtgacatgaaaattgaaacgttgcaaatatttagaatc-atggtctgacatatgctatttgaaagcaagaaagacacatgtactattca
upper sequence: GRMZM2G069198_T02 (Zea mays), 5'ss of exon 13
lower sequence: AT1G15960.1 (Arabidopsis thaliana), 5'ss of exon 12
ATGATACTGTCATTTGAACTCCCTTTTGCTTTAGTTCCACTCCTTAAATTCACCAGCAGCAAAACAAAGATGGGGCAGCATACAAATTCA------------ATATTCgtgagtcattttgtcacagaatcgacagtaattaccttga-atttgcatagcaactcatc-taacttgattgtcaaatgcag
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ATGATCTTATCCTTTGAACTCCCATTTGCTTTAGTCCCACTTCTCAAATTCACAAGCAGTAAAACCAAAATGGGCTCACACGCCAATTCACTTGTGgtaataatattcaacttcacttctgtcatata--cattagtcataacatcaatagaaggaaagaaatctaacataacctgcgggtttcttgtag
upper sequence: GRMZM2G069198_T02 (Zea mays), 5'ss of exon 13
lower sequence: Vv09s0070g00210.t01 (Vitis vinifera), 5'ss of exon 13
ATGATACTGTCATTTGAACTCCCTTTTGCTTTAGTTCCACTCCTTAAATTCACCAGCAGCAAAACAAAGATGGGGCAGCATACAAATTCAATATTCgtgagtcattttgtcacagaat-cgacagtaattaccttgaat-------ttgcatagcaactcatctaacttgattgtcaaatgcag--------------
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ATGATCTTATCATTTGAACTCCCTTTTGCTCTCATTCCACTTCTCAAGTTCACCAGCTGCAAGACTAAGATGGGTGCATATGTCAATTCGACCATGgtaaatgactcaagcttttagtgctattctgcatagatttaacgcattcattatatggtggcatttcagattggtttg--aaattttgtatcgtattacatgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19437199|gb|BM953609.1|BM953609EST: AATTCACCAGCAGCAAAACAAAGATGGGGCAGCATACAAATTCAATATTC ACTGCTGTGCTGACATGGATGATCGGCTCGTTTATTGGTGCCATCAACACC
genomic: AATTCACCAGCAGCAAAACAAAGATGGGGCAGCATACAAATTCAATATTCgtgagtcatt ... tcaaatgcagACTGCTGTGCTGACATGGATGATCGGCTCGTTTATTGTTGTCATCAACACC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGATACTGTCATTTGAACTCCCTTTTGCTTTAGTTCCACTCCTTAAATTCACCAGCAGCAAAACAAAGATGGGGCAGCATACAAATTCAATATTCgtgagtcattttgtcacagaatcgacagtaattaccttgaatttgcatagcaactcatctaacttgattgtcaaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG