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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGCGTACTGGAAGCATTGTATCGGCGCATACTTAGAGCTGAAAGAGAGAAAAAGCGCTTTAAGGCCATCATCATCATACCTCTTTTACCTGGTTTTCAGgtagttttctactagaagttagagatatgttcgatgcttggttacttacataatctcatgacag

Basic information

species Zea mays
transcript GRMZM2G066485_T02
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G066485_T01 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os05g29050.1 (Oryza sativa), 5'ss of exon 13
CCGCGTACTGGAAGCATTGTATCGGCGCATACTTAGAGCTGAAAGAGAGAAAAAGCGCTTTAAGGCCATCATCATCATACCTCTTTTACCTGGTTTTCAGgtagttttctact--agaagttagagatatgttcgatgcttggttacttacataatctcatgacag
 || ||| |||||||||| ||  ||||||||||| | || || ||||| ||||||||||| || |||||||| || |||||||| |||||||||||||||||| |||||||||  ||   ||||  || | || | | | |||||||| ||||||| || || |||
TCGTGTATTGGAAGCATTATACAGGCGCATACTTCGGGCAGAGAGAGAAAAAAAGCGCTTCAAAGCCATCATAATAATACCTCTGTTACCTGGTTTTCAGgtaattttctactgcagtgattaggaatgtttttgtt-cctggttactcacataatatcgtggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211303557|gb|FL306494.1|FL306494
EST:     AAAAGCGCTTTAAGGCCATCATCATCATACCTCTTTTACCTGGTTTTCAG                         GGAGGCATTGATGATGGTGGAGCAGCATCAGTCAGGGCAATCATGCATTGG
genomic: AAAAGCGCTTTAAGGCCATCATCATCATACCTCTTTTACCTGGTTTTCAGgtagttttct ... ctcatgacagGGAGGCATTGATGATGGTGGAGCAGCATCAGTCAGGGCAATCATGCATTGG