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CTGACAATTCTCTGGATTATGCGGCAAATTTCTCACACATGCTTGGTTTTGATGACCCTAAAATGCTGGAGCTGATGCGGCTCTATGTAACAATTCACACgtaattttgcatccatccctgtttctatttttgttatgtctcggaagtacttgttgttttcccctcatactgtgacttgtgttcttctag
species | Zea mays |
transcript | GRMZM2G064023_T01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: GGCTCTATGTAACAATTCACAC TGATCATGAAGGCGGGAATGTCAGTGCTCATACTGGTCATCTGEST: gi|31361054|gb|CD445411.1|CD445411
genomic: GGCTCTATGTAACAATTCACACgtaattttgc ... gttcttctagTGATCATGAAGGCGGGAATGTCAGTGCTCATACTGGTCATCTG
EST: GACGACCCTAAAATGCTGGAGCTGATGCGGCTCTATGTAACAATTCACAC TGATCATGAAGGCGGGAATGTCAGTGCTCATACTGGTCATCTGEST: gi|32859373|gb|CD999054.1|CD999054
genomic: GATGACCCTAAAATGCTGGAGCTGATGCGGCTCTATGTAACAATTCACACgtaattttgc ... gttcttctagTGATCATGAAGGCGGGAATGTCAGTGCTCATACTGGTCATCTG
EST: GATGACCCTAAAATGCTGGAGCTGATGCGGCTCTATGTAACAATTCACAC TGATCATGAAGGCGGGAATGTCAGTGCTCATACEST: gi|5915419|gb|AW053060.1|AW053060
genomic: GATGACCCTAAAATGCTGGAGCTGATGCGGCTCTATGTAACAATTCACACgtaattttgc ... gttcttctagTGATCATGAAGGCGGGAATGTCAGTGCTCATAC
EST: GACGACCCTAAAATGCTGGAGCTGATGCGGCTCTATGTAACAATTCACAC TGATCATGAAGGCGGGAATGTCAGTGCTCATACTGGTCATCTG
genomic: GATGACCCTAAAATGCTGGAGCTGATGCGGCTCTATGTAACAATTCACACgtaattttgc ... gttcttctagTGATCATGAAGGCGGGAATGTCAGTGCTCATACTGGTCATCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGACAATTCTCTGGATTATGCGGCAAATTTCTCACACATGCTTGGTTTTGATGACCCTAAAATGCTGGAGCTGATGCGGCTCTATGTAACAATTCACACgtaattttgcatccatccctgtttctatttttgttatgtctcggaagtacttgttgttttcccctcatactgtgacttgtgttcttctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT