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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTCGCATCATCTGTGAATGGGTTAGCTGGGCCACTACATGGCCTTGCAAATCAGgtatgctcagtttaacgtactagatctgatctggtacataatctctgcattgtgcttccttttacttgagatttgaaaaaagttctcatcaataaatttc...

Basic information

species Zea mays
transcript GRMZM2G063909_T03
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G063909_T03 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os02g10070.1 (Oryza sativa), 5'ss of exon 14
GTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTCGCATCATCTGTGAATGGGTTAGCTGGGCCACTACATGGCCTTGCAAATCAGgtatgctcagtttaacgtactagatctgatctggtacataatctctgcattgtgcttccttttacttgagatttgaaaaaagttctcatcaataaatttc---------------------------------------------------------------------------------------
|||||||||||||||||||| |||||||||||||| ||| |  |  ||||||| |||||||| ||  | || ||||| || |||||||||||||||||||   ||||| |||||  ||||  ||||  |  ||  |    | |||  |  | |  | | |  ||| | ||   |    || |  ||                                                                                        
GTTGGAAGTGCTCTGTCAGACCCTTATCTTTCTTTTGCAGCTGCACTGAATGGTTTAGCTGGACCGTTGCACGGCCTGGCTAATCAGgtatgctcagtttgttgtactggatcttctctgccacatcctg-ctaaacaaggattcactgcattgcatactcaaaatatgt---cgcagattatctttggaagaaggaacataatgttccttccatttttaaattgatattttagtgtgtgtgtgtgaactaaccatagttcacatccaatgcag

upper sequence: GRMZM2G063909_T03 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os11g33240.2 (Oryza sativa), 5'ss of exon 14
GTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTCGCATCATCTGTGAATGGGTTAGCTGGGCCACTACATGGCCTTGCAAATCAGgtat--gctcagtttaacgtactagatctgatctggtacataat-ctctgcattgtgcttccttttacttgagatttgaaaaaagtt-ctcatcaataaatttc---------------------------------------
||||||||||||||||||||||||||||||||||| ||| |  |  ||||||| |||||||| ||| | || ||||| || ||||||||||  |||||||||   | ||| |||||  | ||   |||  | ||    |     | |     || |  | || ||    |  |   |  | |||  ||||                                        
GTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTTGCAGCTGCACTGAATGGTTTAGCTGGACCATTGCACGGCCTGGCTAATCAGgtatatgctcagtttgttgcactggatcttgtttgccgcatcctgctaaaaaggactcattgcgctattcaacatatgctgcagatcatttttaaatcgatttttagtttgtgtgaactgaccatagtcaacatgtaatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60354991|gb|DN221964.1|DN221964
EST:     CATCATCTGTGAATGGGTTAGCTGGGCCACTACATGGCCTTGCAAATCAG                         GAAGCGCTTCTATGGCTCAAGTCTATAATTCAGGAAACAGGGAGCGACGTT
genomic: CATCATCTGTGAATGGGTTAGCTGGGCCACTACATGGCCTTGCAAATCAGgtatgctcag ... tatattgcagGAAGCGCTTCTATGGCTCAAGTCTATAATTCAGGAAACAGGGAGCGACGTT
EST: gi|60345083|gb|DN212056.1|DN212056
EST:     CATCATCTGTGAATGGGTTAGCTGGGCCACTACATGGCCTTGCAAATCAG                         GAAGCGCTTCTATGGCTCAAGTCTATAATTCAGGAAACAGGGAGCGACGTT
genomic: CATCATCTGTGAATGGGTTAGCTGGGCCACTACATGGCCTTGCAAATCAGgtatgctcag ... tatattgcagGAAGCGCTTCTATGGCTCAAGTCTATAATTCAGGAAACAGGGAGCGACGTT
EST: gi|40334210|gb|CK368280.1|CK368280
EST:     CATCATCTGTGAATGGGTT-GCTGGGCCACTACATGGCCTTGCAAATCAG                         GAAGCGCTTCTATGGCTCAAGTCTATAATTCAGGAAACAGGGAGCGACGTT
genomic: CATCATCTGTGAATGGGTTAGCTGGGCCACTACATGGCCTTGCAAATCAGgtatgctcag ... tatattgcagGAAGCGCTTCTATGGCTCAAGTCTATAATTCAGGAAACAGGGAGCGACGTT
EST: gi|60400601|gb|DN233408.1|DN233408
EST:     CCACTACATGGCCTTGCAAATCAG                         GAAGCGCTTCTATGGCTCAAGTCTATAATTCAGGAAACAGGGAGCGACGTT
genomic: CCACTACATGGCCTTGCAAATCAGgtatgctcag ... tatattgcagGAAGCGCTTCTATGGCTCAAGTCTATAATTCAGGAAACAGGGAGCGACGTT