Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGAATATGTGATTCCTCTCATCTTCCCATTACTCACAGCACATCAACTGAATGTACAACAATTTGCCAAGTATATGCTATTTGTCAAGGACATTACAAGgtattgtttatcctgcattgctctcctgtgtccattaatatgtcaactaaactactacctatttctacag

Basic information

species Zea mays
transcript GRMZM2G061681_T02
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G061681_T02 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os01g42950.2 (Oryza sativa), 5'ss of exon 13
CGGAATATGTGATTCCTCTCATCTTCCCATTACTCACAGCACATCAACTGAATGTACAACAATTTGCCAAGTATATGCTATTTGTCAAGGACATTACAAGgtattgtttatcctgcattgctctcc-tgtgtccattaatatgtcaactaaactactacctatttctacag----
|||| || |||||||||||| |||||||| | |||||||||||||||||||||||||| |||||||| ||||| || |||||||||||||| || ||||||||   ||| |||  |    ||  |  || ||  || |||||| |||||||| || | |||| ||||||||    
CGGAGTACGTGATTCCTCTCGTCTTCCCACTGCTCACAGCACATCAACTGAATGTACAGCAATTTGCTAAGTACATACTATTTGTCAAGGATATCACAAGgtaccttttgtcccaccacacttgcgatgcgttaatcaatatgccaactaaattagtgcctacttctacagcaag

upper sequence: GRMZM2G061681_T02 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os01g42950.1 (Oryza sativa), 5'ss of exon 13
CGGAATATGTGATTCCTCTCATCTTCCCATTACTCACAGCACATCAACTGAATGTACAACAATTTGCCAAGTATATGCTATTTGTCAAGGACATTACAAGgtattgtttatcctgcattgctctcc-tgtgtccattaatatgtcaactaaactactacctatttctacag
|||| || |||||||||||| |||||||| | |||||||||||||||||||||||||| |||||||| ||||| || |||||||||||||| || ||||||||   ||| |||  |    ||  |  || ||  || |||||| |||||||| || | |||| ||||||||
CGGAGTACGTGATTCCTCTCGTCTTCCCACTGCTCACAGCACATCAACTGAATGTACAGCAATTTGCTAAGTACATACTATTTGTCAAGGATATCACAAGgtaccttttgtcccaccacacttgcgatgcgttaatcaatatgccaactaaattagtgcctacttctacag

upper sequence: GRMZM2G061681_T02 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA12G37070.1 (Glycine max), 5'ss of exon 13
CGGAATATGTGATTCCTCTCATCTTCCCATTACTCACAGCACATCAACTGAATGTACAACAATTTGCCAAGTATATGCTATTTGTCAAGGACATTACAAGgtattgtttatcctgc--------attgctctcctgtgtccattaatat--gtcaactaaactactacctatttct-acag------------------------------------------
| ||  ||||  ||||  |  |  | ||  | || || || || ||| ||||||| ||||| |||||||| |||||||| ||||||||||| ||      ||| | |||    |          |||   | ||| | |   ||  |||  |||  |   | |       || ||| |||                                           
CTGAGCATGTTCTTCCATTGCTTATACCCCTGCTGACTGCTCAACAATTGAATGTTCAACAGTTTGCCAAATATATGCTCTTTGTCAAGGATATGCTCCAgtaatattttcttttttaaaaaaaattaagcccctctattttttgttatctgtcttcctcattgtccttaatctctgacaaacttctctttaattttttttttgaactttgtgctctgtacag

upper sequence: GRMZM2G061681_T02 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA09G00470.1 (Glycine max), 5'ss of exon 13
CGGAATATGTGATTCCTCTCATCTTCCCATTACTCACAGCACATCAACTGAATGTACAACAATTTGCCAAGTATATGCTATTTGTCAAGGACATTACAAGgtattgtttatcctgcattgctctcctgtgtccattaatatgtcaactaaactactacctatttctacag----------------------------------------------------------------
| ||  || |  ||||  |  |  | ||  | || || || |  ||| ||||||| ||||| |||||||| |||||||| ||||||||||| ||      ||| | ||| |  |  ||   |||  |    || | | | | |  | | |  | ||  || | ||                                                                     
CTGAGCATCTTCTTCCATTGCTTATGCCCCTGCTGACTGCTCCACAATTGAATGTTCAACAGTTTGCCAAATATATGCTCTTTGTCAAGGATATGCTCCAgtaat-ttttttttaaataattct--taaccccctcattttttttatttattttctgtctttctcattgtccttgatctctgacaaacttctcttttttttttttttttaaaaaaaaaactgtgttctgtatag

upper sequence: GRMZM2G061681_T02 (Zea mays), 5'ss of exon 13
lower sequence: AT1G71410.1 (Arabidopsis thaliana), 5'ss of exon 13
CGGAATATGTGATTCCTCTCATCTTCCCATTACTCACAGCACATCAACTGAATGTACAACAATTTGCCAAGTATATGCTATTTGTCAAGGACATTACAAGgtat-----tgtttatcctgcattgctctcctgt-gtccattaatatgtcaactaaactactacc--tatttctacag--------------------------
| ||| ||||| || | || ||  | ||  | ||||| || || |||||||| || ||||| |||||||| |||||||||||||||||||| |||   |||| |     |  |||||   || | || |    | ||   || |  |    || | |  | |     | | | ||  |                          
CAGAACATGTGCTTACCCTGATGATGCCGCTTCTCACTGCCCAACAACTGAACGTCCAACAGTTTGCCAAATATATGCTATTTGTCAAGGATATTCTCAGgtgtgcatcttgttatcagtcagtacttttgaatagtgttttcacgtccgtaccacaacagtgttgttgtctttattgtgatttgtattcatctattgtaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211454621|gb|FL182680.1|FL182680
EST:     AATGTACAACAATTTGCCAAGTATATGCTATTTGTCAAGGACATTACAAG                         CAAGATCGAAGAGAAGCGTGGTGTGACTGTTACAGATAATGGGAACACAGA
genomic: AATGTACAACAATTTGCCAAGTATATGCTATTTGTCAAGGACATTACAAGgtattgttta ... atttctacagCAAGATCGAAGAGAAGCGTGGTGTGACTGTTACAGATAATGGGAACACAGA