1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TGATTCAGCTGCTGGTGGGTACATTGATCCAATGGATCTTTACGGAGCTTATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAATgtaagcaccaaacaaatgcacaaatggcaagttttttttaatcatctgtgaatcgtcatctaataatcaattttataatgttctag
species | Zea mays |
transcript | GRMZM2G060977_T01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: GATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAAT TATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGAEST: gi|211495481|gb|FL464081.1|FL464081
genomic: GATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAATgtaagcacca ... aatgttctagTATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAAT TATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGAEST: gi|78107953|gb|DV526371.1|DV526371
genomic: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAATgtaagcacca ... aatgttctagTATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTTTAGATTACAAT TATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGGGAEST: gi|60352542|gb|DN219515.1|DN219515
genomic: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAATgtaagcacca ... aatgttctagTATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAAT TATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGAEST: gi|148949106|gb|EC894535.2|EC894535
genomic: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAATgtaagcacca ... aatgttctagTATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAAT TATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGAEST: gi|149076356|gb|EE164973.2|EE164973
genomic: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAATgtaagcacca ... aatgttctagTATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAAT TATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGAEST: gi|6538840|gb|AW224979.1|AW224979
genomic: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAATgtaagcacca ... aatgttctagTATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAAT TATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGAEST: gi|149085023|gb|EE174532.2|EE174532
genomic: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAATgtaagcacca ... aatgttctagTATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTTTAGATTACAAT TATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGAEST: gi|113702665|gb|EE680169.1|EE680169
genomic: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAATgtaagcacca ... aatgttctagTATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAAT TATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGAEST: gi|9730867|gb|BE509619.1|BE509619
genomic: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAATgtaagcacca ... aatgttctagTATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGA
EST: ATGGTTCAATGAGATCCTTCGGCAGGTTCTGTGGCGGTCTAGATTACAAT TATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGAEST: gi|37395454|gb|CF635007.1|CF635007
genomic: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAATgtaagcacca ... aatgttctagTATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAAT TATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGAEST: gi|33101470|gb|CF061430.1|CF061430
genomic: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAATgtaagcacca ... aatgttctagTATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAAT TATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGAEST: gi|166636346|gb|EG278815.1|EG278815
genomic: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAATgtaagcacca ... aatgttctagTATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGA
EST: CTAGATTACAAT TATGGCTATGGACCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGEST: gi|6865075|gb|AW360425.1|AW360425
genomic: CTAGATTACAATgtaagcacca ... aatgttctagTATGGCTATGG-CCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCG
EST: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAAT TATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGAEST: gi|60342148|gb|DN209121.1|DN209121
genomic: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAATgtaagcacca ... aatgttctagTATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAAT TATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGAEST: gi|60342166|gb|DN209139.1|DN209139
genomic: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAATgtaagcacca ... aatgttctagTATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAAT TATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGAEST: gi|88746930|gb|DY531071.1|DY531071
genomic: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAATgtaagcacca ... aatgttctagTATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAAT TATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGGGAEST: gi|148942651|gb|EC887670.2|EC887670
genomic: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAATgtaagcacca ... aatgttctagTATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTTTAGATTACAAT TATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGAEST: gi|60397921|gb|DN230737.1|DN230737
genomic: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAATgtaagcacca ... aatgttctagTATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAAT TATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGAEST: gi|211424816|gb|FL445164.1|FL445164
genomic: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAATgtaagcacca ... aatgttctagTATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAAT TATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGAEST: gi|32805940|gb|CD958174.1|CD958174
genomic: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAATgtaagcacca ... aatgttctagTATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGA
EST: GATCTCTCGGCAGGTTCTGTGGCGGTCTAGATTACAAT TATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGAEST: gi|211138006|gb|FL213711.1|FL213711
genomic: GATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAATgtaagcacca ... aatgttctagTATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAAT TATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGAEST: gi|37397094|gb|CF635842.1|CF635842
genomic: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAATgtaagcacca ... aatgttctagTATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAAT TATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGAEST: gi|32864876|gb|CF004558.1|CF004558
genomic: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAATgtaagcacca ... aatgttctagTATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAAT TATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGAEST: gi|40336792|gb|CK370862.1|CK370862
genomic: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAATgtaagcacca ... aatgttctagTATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAAT TATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGA
genomic: ATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAATgtaagcacca ... aatgttctagTATGGCTATGGCCCCAGCAGCGGAAGCAGCCGATCAAGATCGGATTGGCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATTCAGCTGCTGGTGGGTACATTGATCCAATGGATCTTTACGGAGCTTATGGTTCAATGAGATCTTTCGGCAGGTTCTGTGGCGGTCTAGATTACAATgtaagcaccaaacaaatgcacaaatggcaagttttttttaatcatctgtgaatcgtcatctaataatcaattttataatgttctag
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