1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GTCTGTGACTTTGGTCTCTCCAGATTGAAGGCAAACACATTTCTGTCTTCCAAGACTGCAGCAGGGACTgtaagttatattgttccgtttagtgtattttgttttgttacgcaattctatgtggctaagtgttattctgtgccatgctatctag
species | Zea mays |
transcript | GRMZM2G059671_T05 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CCAGATTGAAGGCAAACACATTTCTGTCTTCCAAGACTGCAGCAGGGACT CCTGAGTGGATGGCACCAGAAGTTCTACGAGACGAGCCCTCAAATGAGAAGEST: gi|26456437|gb|CA828020.1|CA828020
genomic: CCAGATTGAAGGCAAACACATTTCTGTCTTCCAAGACTGCAGCAGGGACTgtaagttata ... tgctatctagCCTGAGTGGATGGCACCAGAAGTTCTACGAGACGAGCCCTCAAATGAGAAG
EST: CCAGATTGAAGGCAAACACATTTCTGTCTTCCAAGACTGCAGCAGGGACT CCTGAGTGGATGGCACCAGAAGTTCTACGAGACGAGCCCTCAAATGAGAAGEST: gi|20336958|gb|BQ172588.1|BQ172588
genomic: CCAGATTGAAGGCAAACACATTTCTGTCTTCCAAGACTGCAGCAGGGACTgtaagttata ... tgctatctagCCTGAGTGGATGGCACCAGAAGTTCTACGAGACGAGCCCTCAAATGAGAAG
EST: CCAGATTGAAGGCAAACACATTTCTGTCTTCCAAGACTGCAGCAGGGACT CCTGAGTGGATGGCACCAGAAGTTCTACGAGACGAGCCCTCAAATGAGAAGEST: gi|60337361|gb|DN204334.1|DN204334
genomic: CCAGATTGAAGGCAAACACATTTCTGTCTTCCAAGACTGCAGCAGGGACTgtaagttata ... tgctatctagCCTGAGTGGATGGCACCAGAAGTTCTACGAGACGAGCCCTCAAATGAGAAG
EST: CCAGATTGAAGGCAAACACATTTCTGTCTTCCAAGACTGCAGCAGGGACT CCTGAGTGGATGGCACCAGAAGTTCTACGAGACGAGCCCTCAAATGAGAAG
genomic: CCAGATTGAAGGCAAACACATTTCTGTCTTCCAAGACTGCAGCAGGGACTgtaagttata ... tgctatctagCCTGAGTGGATGGCACCAGAAGTTCTACGAGACGAGCCCTCAAATGAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTGTGACTTTGGTCTCTCCAGATTGAAGGCAAACACATTTCTGTCTTCCAAGACTGCAGCAGGGACTgtaagttatattgttccgtttagtgtattttgttttgttacgcaattctatgtggctaagtgttattctgtgccatgctatctag
- - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG