Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAGAAGTTAGCAAGCAGTGCAACGCGCTTCCAAGAGGTGAATTCGCTTCAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAGgtagtttttcactcctgattcctgcaacggatgcatctatgctgcccatttgtgttttaagtgcaccaccattctactgtgacctcagtgccttccaattatgctggacatttccgaggaacttcgacatctgtttctactttttgcag

Basic information

species Zea mays
transcript GRMZM2G058584_T01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G058584_T01 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os01g13190.1 (Oryza sativa), 5'ss of exon 11
GGCAGAAGTTAGCAAGCAGTGCAACGCGCTTCCAAGAGGTGAATTCGCTTCAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAGgtagtttttcactcctg---attcctgcaacg------------gatgcatctatgctgc-ccatttgtgttttaagt-gcaccaccattctactgtgacctcagtgccttccaattatgc------tggacatttccgaggaacttcgaca-----tctgtttctactttttgcag
||||||||||||||||||||||   || ||||| || || ||||| ||||| ||||| ||| ||||||| |||||||| || |||||||| |||||||||||| || |||| |||||   | ||  | |                | |||  ||   | |  || | | |||| | || | |  |   | |  |    |     ||   |   ||||||        | | | || ||  |||   | ||||      || ||||| | || || ||
GGCAGAAGTTAGCAAGCAGTGCTCTGCTCTTCCTAGGGGAGAATTTGCTTCGAAAGCTCTTGGCCACAGTTTCACTGTTTTTGCGAAAGACATGGTTGAGgtaattcttcattcctgcccactctcgaattatttataatttgtaaggcacgtactatacatcactggagtttgaggtcgtagaattttgcagcatgcatgaaggtaaatgaaaattatctgatctattgccgttcccagggattgttgacaagccccctctttcttccttatgtag

upper sequence: GRMZM2G058584_T01 (Zea mays), 5'ss of exon 13
lower sequence: Vv18s0166g00300.t01 (Vitis vinifera), 5'ss of exon 13
GGCAGAAGTTAGCAAGCAGTGCAACGCGCTTCCAAGAGGTGAATTCGCTTCAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAGgtagtt--tttcactcctgattcctgcaacggatgcatctatgctgcccatttgtgttttaagtgcaccaccattctactgtgacctcagtgccttccaattatgctggacatttccgaggaacttcgacatctgtttctactttttgcag
||  ||| | |||||||||||| |    ||||||||||| || || |||||||||||  | |||||||| ||||||||||| ||     |||||||||||||   |  | | | || |||||   |   | ||| | |  ||  |    |||||| ||||   ||||     |   |  |  ||    ||||  |       |||| |                                           
GGAGGAAATCAGCAAGCAGTGCCAAAGCCTTCCAAGAGGAGAGTTTGCTTCAAAAGCTTTGAGCCACAGTTTCACTGTGTTTGCTCGCAATATGGTTGAGgttagtggtcttattcttgatt---ggggctgattc-ttaattttttgaatttgttttttgtatgcatatttagattgtttggaaaatagtgattgg-----atgcaga------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71309836|gb|DR791200.1|DR791200
EST:     CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAG                         GCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
genomic: CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAGgtagtttttc ... ctttttgcagGCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
EST: gi|8516559|gb|BE123284.1|BE123284
EST:     CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGGTGAG                         GCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
genomic: CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAGgtagtttttc ... ctttttgcagGCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
EST: gi|21331772|gb|BQ487153.1|BQ487153
EST:     CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAG                         GCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
genomic: CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAGgtagtttttc ... ctttttgcagGCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
EST: gi|101389917|gb|EB816889.1|EB816889
EST:     CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAG                         GCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
genomic: CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAGgtagtttttc ... ctttttgcagGCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
EST: gi|23357617|gb|BU645266.1|BU645266
EST:     CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGCTGAG                         GCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAAC
genomic: CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAGgtagtttttc ... ctttttgcagGCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAAC
EST: gi|78025141|gb|DV493528.1|DV493528
EST:     CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAG                         GCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
genomic: CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAGgtagtttttc ... ctttttgcagGCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
EST: gi|71432207|gb|DR813257.1|DR813257
EST:     CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAG                         GCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
genomic: CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAGgtagtttttc ... ctttttgcagGCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
EST: gi|76283948|gb|DV023516.1|DV023516
EST:     CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAG                         GCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
genomic: CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAGgtagtttttc ... ctttttgcagGCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
EST: gi|76012898|gb|DT940068.1|DT940068
EST:     CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAG                         GCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
genomic: CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAGgtagtttttc ... ctttttgcagGCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
EST: gi|50325709|gb|CO520835.1|CO520835
EST:     CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAG                         GCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
genomic: CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAGgtagtttttc ... ctttttgcagGCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
EST: gi|211059003|gb|FL461767.1|FL461767
EST:     CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAG                         GCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTAATCATCAACGTA
genomic: CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAGgtagtttttc ... ctttttgcagGCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
EST: gi|101394855|gb|EB819362.1|EB819362
EST:     GAAAGATATGGGTGAG                         GGGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
genomic: GAAAGATATGGTTGAGgtagtttttc ... ctttttgcagGCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
EST: gi|71313988|gb|DR793606.1|DR793606
EST:     CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAG                         GCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
genomic: CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAGgtagtttttc ... ctttttgcagGCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
EST: gi|148957295|gb|EC903330.2|EC903330
EST:     CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAG                         GCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
genomic: CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAGgtagtttttc ... ctttttgcagGCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
EST: gi|78179432|gb|DV549805.1|DV549805
EST:     CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAG                         GCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
genomic: CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAGgtagtttttc ... ctttttgcagGCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
EST: gi|93017017|gb|EB642537.1|EB642537
EST:     CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAG                         GCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
genomic: CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAGgtagtttttc ... ctttttgcagGCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
EST: gi|86471200|gb|DY237570.1|DY237570
EST:     CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAG                         GCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
genomic: CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAGgtagtttttc ... ctttttgcagGCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
EST: gi|71432206|gb|DR813256.1|DR813256
EST:     CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAG                         GCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
genomic: CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAGgtagtttttc ... ctttttgcagGCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
EST: gi|71774595|gb|DR972473.1|DR972473
EST:     CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAG                         GCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
genomic: CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAGgtagtttttc ... ctttttgcagGCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
EST: gi|211215840|gb|FL096753.1|FL096753
EST:     AAAGCACTTAGCCACAGGCTTCACTGTGTTCGCGAAAAGATATGGTTGAA                         GCGATATCAGTCNCCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGT
genomic: AAAGCACTTAGCCACAG-CTTCACTGTGTTCGCGAAA-GATATGGTTGAGgtagtttttc ... ctttttgcagGCGATATCATTCTC-AAATCTGTATGCCCCTGAGCATTTGATCATCAACGT
EST: gi|32840983|gb|CD980664.1|CD980664
EST:     CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAG                         GCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
genomic: CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAGgtagtttttc ... ctttttgcagGCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
EST: gi|101394357|gb|EB819113.1|EB819113
EST:     TTCGCGAAAGATATGGTTGAG                         GCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
genomic: TTCGCGAAAGATATGGTTGAGgtagtttttc ... ctttttgcagGCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
EST: gi|71769688|gb|DR967625.1|DR967625
EST:     CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAG                         GCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA
genomic: CAAAAGCACTTAGCCACAGCTTCACTGTGTTCGCGAAAGATATGGTTGAGgtagtttttc ... ctttttgcagGCGATATCATTCTCAAATCTGTATGCCCCTGAGCATTTGATCATCAACGTA