1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
AACCTGTGCACGACGGCAGCGTATCGCCCTGTGAGAGAGCTAATCCAGAAGGAAAGAAAGAAGGAGCTGgtaatcaaaccaaaccgccagcatattaagaatttaactcatgatgaattgtgtgaatgaattcactatgcaatctttatcttcaatcccttcag
species | Zea mays |
transcript | GRMZM2G058491_T01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CATATCGCCCTGTGAGGGAGCTAATCCAGAAGGAAAGAAAGAAGGAGCTG GAGAAGCTGAAGTGTGAGAAAGGAGAAACTCCGTCGGATCCTCCGAAGAAGEST: gi|40335664|gb|CK369734.1|CK369734
genomic: CGTATCGCCCTGTGAGAGAGCTAATCCAGAAGGAAAGAAAGAAGGAGCTGgtaatcaaac ... atcccttcagGAGAAGCTGAAGTGTGAGAAAGGAGAAACTCCGTCGGATCCTCCGAAGAAG
EST: CATATCGCCCTGTGAGGGAGCTAATCCAGAAGGAAAGAAAGAAGGAGCTG GAGAAGCTGAAGTGTGAGAAAGGAGAAACTCCGTCGGATCCTCCGAAGAAGEST: gi|94477011|gb|EB705969.1|EB705969
genomic: CGTATCGCCCTGTGAGAGAGCTAATCCAGAAGGAAAGAAAGAAGGAGCTGgtaatcaaac ... atcccttcagGAGAAGCTGAAGTGTGAGAAAGGAGAAACTCCGTCGGATCCTCCGAAGAAG
EST: GGTATCGCCCTGTGAGAGAGTTAATCCAGAAGGAAAGAAAGAAGGAGCTG GAGAAGCTGAAGTGTGAGAAAGGAGAAACTCCGTCGGATCCTCCGAAGAAGEST: gi|37384938|gb|CF629576.1|CF629576
genomic: CGTATCGCCCTGTGAGAGAGCTAATCCAGAAGGAAAGAAAGAAGGAGCTGgtaatcaaac ... atcccttcagGAGAAGCTGAAGTGTGAGAAAGGAGAAACTCCGTCGGATCCTCCGAAGAAG
EST: CATATCGCCCTGTGAGGGAGCTAATCCAGAAGGAAAGAAAGAAGGAGCTG GAGAAGCTGAAGTGTGAGAAAGGAGAAACTCCGTCGGATCCTCCGAAGAAG
genomic: CGTATCGCCCTGTGAGAGAGCTAATCCAGAAGGAAAGAAAGAAGGAGCTGgtaatcaaac ... atcccttcagGAGAAGCTGAAGTGTGAGAAAGGAGAAACTCCGTCGGATCCTCCGAAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACCTGTGCACGACGGCAGCGTATCGCCCTGTGAGAGAGCTAATCCAGAAGGAAAGAAAGAAGGAGCTGgtaatcaaaccaaaccgccagcatattaagaatttaactcatgatgaattgtgtgaatgaattcactatgcaatctttatcttcaatcccttcag
- - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT