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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTATGCTGTTGATTTTCAGAATGTTTGTTGATGCACTGGATGCACAAATGTATGACAAGCACCATCAAACTGGGCATTGCATCTTGAGTCTCCACAAGgtgaaccctttgcttcgtctttagataacattaaatatttttttttcaaatcctgtcccagagcaatagattttctgaagatagaataatcgatagtgcg...

Basic information

species Zea mays
transcript GRMZM2G053047_T03
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G053047_T03 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os01g43380.1 (Oryza sativa), 5'ss of exon 8
CATTATGCTGTTGATTTTCAGAATGTTTGTTGATGCACTGGATGCACAAATGTATGACAAGCACCATCAAACTGGGCATTGCATCTTGAGTCTCCACAAGgtgaaccctttgcttcgtctttagataacattaaatatttttttttcaaatcctgtcccaga-gcaatagatttt--ctgaagatagaataat-cgatagtgcg
                     ||||||||| ||||| ||||||||||||||||| ||||| || ||| |||| ||||||||||| |||||||| |||| ||||   || |  |||   |||||  ||  || ||| |  |||  ||  |||  | |  |||  |||    | ||   |||||   |    |||  | |    | 
---------------------AATGTTTGTAGATGCTCTGGATGCACAAATGTACGACAAACATCATGAAACAGGGCATTGCATATTGAGTCTTCACAGGgtgcgtccatctctta--ctttatttag-atgaaacaaatttcattttaatgttctttcagttgcagcgcagttcagctgaattcaatgaaatatgctcacac-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78544401|gb|DV621899.1|DV621899
EST:     TGTATGACAAGCACCATCAAACTGGGCATTGCATCTTGAGTCTCCACAAG                         GACCAGCACTGCTACTCCCGTCTTCTGGAGTTGATTGTGAATGTTTGGGCA
genomic: TGTATGACAAGCACCATCAAACTGGGCATTGCATCTTGAGTCTCCACAAGgtgaaccctt ... ttttgtacagGACCAGCACTGCTACTCCCGTCTTCTGGAGTTGATTGTGAATGTTTGGGCA
EST: gi|60355160|gb|DN222133.1|DN222133
EST:     AGTCTCCACAAG                         GACCAGCACTGCTACTCCCGTCTTCTGGAGTTGATTGTGAATGTTTGGGCA
genomic: AGTCTCCACAAGgtgaaccctt ... ttttgtacagGACCAGCACTGCTACTCCCGTCTTCTGGAGTTGATTGTGAATGTTTGGGCA
EST: gi|20337002|gb|BQ172632.1|BQ172632
EST:     TGTATGACAAGCACCATCAAACTGGGCATTGCATCTTGAGTCTCCACAAG                         GACCAGCACTGCTACTCCCGTCTTCTGGAGTTGATTGTGAATGTTTGGGCA
genomic: TGTATGACAAGCACCATCAAACTGGGCATTGCATCTTGAGTCTCCACAAGgtgaaccctt ... ttttgtacagGACCAGCACTGCTACTCCCGTCTTCTGGAGTTGATTGTGAATGTTTGGGCA