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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTTGGCCTCTGGTGCCATCTGATCGTCCCGTTGGTGATGTTCCGGCCATACCATCCTGGCAGCAGGCGTACATGGTTGACAGgtgaatttcttctgcctttgcgaatccccctcaaagtatatagaggaagaatcctgtattgtgcaatacagtataacaagcaccgcgtccgtgtgtctgcag

Basic information

species Zea mays
transcript GRMZM2G045241_T07
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76294030|gb|DV033598.1|DV033598
EST:     GGTGATGTTCCGGCCATACCATCCTGGCAGCAGGCGTACATGGTTGACAG                         CCAAGGCGCATTTTCTGGCTCTCCGTTCTTGCAGTCGAACCTGTTGGAGAA
genomic: GGTGATGTTCCGGCCATACCATCCTGGCAGCAGGCGTACATGGTTGACAGgtgaatttct ... gtgtctgcagCCAAGGCGCATTTTCTGGCTCTCCGTTCTTGCAGTCGAACCTGTTGGAGAA
EST: gi|5871498|gb|AW017969.1|AW017969
EST:     GGTGATGTTCCGGCCATACCATCCTGGCAGCAGGCGTACATGGTTGACAG                         CCAAGGCGCATTTTNCTGGCTCTCCGTTTCTTGCAGTCGAACCTGTTGGAG
genomic: GGTGATGTTCCGGCCATACCATCCTGGCAGCAGGCGTACATGGTTGACAGgtgaatttct ... gtgtctgcagCCAAGGCGCATTTT-CTGGCTCTCCG-TTCTTGCAGTCGAACCTGTTGGAG
EST: gi|47961462|gb|CN844171.1|CN844171
EST:     GGTGATGTTCCGGCCATACCATCCTGGCAGCAGGCGTACATGGTTGACAG                         CCAAGGCGCATTTTCTGGCTCTCCGTTCTTGCAGTCGAACCTGTTGGAGAA
genomic: GGTGATGTTCCGGCCATACCATCCTGGCAGCAGGCGTACATGGTTGACAGgtgaatttct ... gtgtctgcagCCAAGGCGCATTTTCTGGCTCTCCGTTCTTGCAGTCGAACCTGTTGGAGAA
EST: gi|78081455|gb|DV509867.1|DV509867
EST:     GGTGATGTTCCGGCCATACCATCCTGGCAGCAGGCGTACATGGTTGACAG                         CCAAGGCGCATTTTCTGGCTCTCCGTTCTTGCAGTCGAACCTGTTGGAGAA
genomic: GGTGATGTTCCGGCCATACCATCCTGGCAGCAGGCGTACATGGTTGACAGgtgaatttct ... gtgtctgcagCCAAGGCGCATTTTCTGGCTCTCCGTTCTTGCAGTCGAACCTGTTGGAGAA
EST: gi|211252583|gb|FL430692.1|FL430692
EST:     GGTGATGTTCCGGCCATACCATCCTGGCAGCAGGCGTACATGGTTGACAG                         CCAAGGCGCATTTTCTGGCTCTCCGTTCTTGCAGTCGAACCTGTTGGAGAA
genomic: GGTGATGTTCCGGCCATACCATCCTGGCAGCAGGCGTACATGGTTGACAGgtgaatttct ... gtgtctgcagCCAAGGCGCATTTTCTGGCTCTCCGTTCTTGCAGTCGAACCTGTTGGAGAA
EST: gi|76908596|gb|DV163020.1|DV163020
EST:     GGTGATGTTCCGGCCATACCATCCTGGCAGCAGGCGTACATGGTTGACAG                         CCAAGGCGCATTTTCTGGCTCTCCGTTCTTGCAGTCGAACCTGTTGGAGAA
genomic: GGTGATGTTCCGGCCATACCATCCTGGCAGCAGGCGTACATGGTTGACAGgtgaatttct ... gtgtctgcagCCAAGGCGCATTTTCTGGCTCTCCGTTCTTGCAGTCGAACCTGTTGGAGAA
EST: gi|211489896|gb|FL473954.1|FL473954
EST:     GGTGATGTTCCGGCCATACCATCCTGGCAGCAGGCGTACATGGTTGACAG                         CCAAGGCGCATTTTCTGGCTCTCCGTTCTTGCAGTCGAACCTGTTGGAGAA
genomic: GGTGATGTTCCGGCCATACCATCCTGGCAGCAGGCGTACATGGTTGACAGgtgaatttct ... gtgtctgcagCCAAGGCGCATTTTCTGGCTCTCCGTTCTTGCAGTCGAACCTGTTGGAGAA
EST: gi|15080211|gb|BI388982.1|BI388982
EST:     GGTGATGTTCCGGCCATACCATCCTGGCAGCAGGCGTACATGGTTGACAG                         CCAAGGCGCATTTTCTGGCTCTCCGTTCTTGCAGTCGAACCTGTTGGAGAA
genomic: GGTGATGTTCCGGCCATACCATCCTGGCAGCAGGCGTACATGGTTGACAGgtgaatttct ... gtgtctgcagCCAAGGCGCATTTTCTGGCTCTCCGTTCTTGCAGTCGAACCTGTTGGAGAA
EST: gi|211489897|gb|FL473955.1|FL473955
EST:     GGTGATGTTCCGGCCATACCATCCTGGCAGCAGGCGTACATGGTTGACAG                         CCAAGGCGCATTTTCTGGCTCTCCGTTCTTGCAGTCGAACCTGTTGGAGAA
genomic: GGTGATGTTCCGGCCATACCATCCTGGCAGCAGGCGTACATGGTTGACAGgtgaatttct ... gtgtctgcagCCAAGGCGCATTTTCTGGCTCTCCGTTCTTGCAGTCGAACCTGTTGGAGAA
EST: gi|78117446|gb|DV535833.1|DV535833
EST:     GGTGATGTTCCGGCCATACCATCCTGGCAGCAGGCGTACATGGTTGACAG                         CCAAGGCGCATTTTCTGGCTCTCCGTTCTTGCAGTCGAACCTGTTGGAGAA
genomic: GGTGATGTTCCGGCCATACCATCCTGGCAGCAGGCGTACATGGTTGACAGgtgaatttct ... gtgtctgcagCCAAGGCGCATTTTCTGGCTCTCCGTTCTTGCAGTCGAACCTGTTGGAGAA
EST: gi|211260967|gb|FL474891.1|FL474891
EST:     GGTGATGTTCCGGCCATACCATCCTGGCAGCAGGCGTACATGGTTGACAG                         CCAAGGCGCATTTTCTGGCTCTCCGTTCTTGCAGTCGAACCTGTTGGAGAA
genomic: GGTGATGTTCCGGCCATACCATCCTGGCAGCAGGCGTACATGGTTGACAGgtgaatttct ... gtgtctgcagCCAAGGCGCATTTTCTGGCTCTCCGTTCTTGCAGTCGAACCTGTTGGAGAA
EST: gi|166572824|gb|EG235097.1|EG235097
EST:     GGTGATGTTCCGGCCATACCATCCTGGCAGCAGGCGTACATGGTTGACAG                         CCAAGGCGCATTTTCTGGCTCTCCGTTCTTGCAGTCG
genomic: GGTGATGTTCCGGCCATACCATCCTGGCAGCAGGCGTACATGGTTGACAGgtgaatttct ... gtgtctgcagCCAAGGCGCATTTTCTGGCTCTCCGTTCTTGCAGTCG