1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ACCCCTGATAGCGCGAAGCTCATGCTGCTCCGCCTCCACAGCAGATGGGTAGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAGgtaattaagcgctcgtagtgagcttgtatatgcatgtatatcgtttctctggtgacgcttttgctttgcttccactcctactcgtag
species | Zea mays |
transcript | GRMZM2G044629_T02 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAG GCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCAEST: gi|211119106|gb|FL479441.1|FL479441
genomic: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAGgtaattaagc ... ctactcgtagGCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCA
EST: CTCTGTCCCCTTGTATATGACAG GCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCAEST: gi|149100895|gb|EE186990.2|EE186990
genomic: CTCTGTGCCCTTGTATATGACAGgtaattaagc ... ctactcgtagGCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCA
EST: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAG GCGTCGAAGTTTTTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCAEST: gi|78115802|gb|DV534190.1|DV534190
genomic: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAGgtaattaagc ... ctactcgtagGCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCA
EST: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAG GCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCAEST: gi|71429873|gb|DR810923.1|DR810923
genomic: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAGgtaattaagc ... ctactcgtagGCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCA
EST: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAG GCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCAEST: gi|211119105|gb|FL479440.1|FL479440
genomic: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAGgtaattaagc ... ctactcgtagGCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCA
EST: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAG GCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCAEST: gi|16926727|gb|BM079795.1|BM079795
genomic: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAGgtaattaagc ... ctactcgtagGCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCA
EST: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAG GCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCAEST: gi|211094109|gb|FL460556.1|FL460556
genomic: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAGgtaattaagc ... ctactcgtagGCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCA
EST: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAG GCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCAEST: gi|149014876|gb|EE044587.2|EE044587
genomic: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAGgtaattaagc ... ctactcgtagGCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCA
EST: AGTCGTTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAG GCGTGGAAGTTTCTCCGCTCTCCTCTTACGCCGGAGAGAACCTGGAAGCCAEST: gi|14244148|gb|BG841843.2|BG841843
genomic: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAGgtaattaagc ... ctactcgtagGCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCA
EST: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAG GCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCAEST: gi|4225561|gb|AI396014.1|AI396014
genomic: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAGgtaattaagc ... ctactcgtagGCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCA
EST: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAG GCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCA
genomic: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAGgtaattaagc ... ctactcgtagGCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCCCTGATAGCGCGAAGCTCATGCTGCTCCGCCTCCACAGCAGATGGGTAGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAGgtaattaagcgctcgtagtgagcttgtatatgcatgtatatcgtttctctggtgacgcttttgctttgcttccactcctactcgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT