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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTTGGTTATTCAGGCATTCAATTTGACGCAAATCGACTTGATATTTCTCTGGGAGTTATTCCACTAATGAAAAATGGGCAACCACTCCCCTTTGACAGgttagacaaagttatattgcatagtcaatccatgttttgtcgtcttggtcaccgtaaatagactagggtttctttagttctattaggatctaagtgcttattctctttctttag

Basic information

species Zea mays
transcript GRMZM2G044237_T01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044237_T02 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os03g17120.1 (Oryza sativa), 5'ss of exon 14
CAGTTGGTTATTCAGGCATTCAATTTGACGCAAATCGACTTGATATTTCTCTGGGAGTTATTCCACTAATGAAAAATGGGCAACCACTCCCCTTTGACAGgttagacaaagttatattgcatagtcaatccatgttttgtcgtcttggtcaccgtaaatagactagggtttctttagttct---attaggatctaag-tgcttattctctttctttag
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CTGTCGGTTATTCAGGCATTCAGTTTGATGCGGACCAGCTTGATATTTCCCTTGGAGCTATTCCACTAATGAAAAATGGTCAACCACTCCCATTTGACAGgttaagaaaccttg-acaacatag--aattattttttt----tattgacgactttgaatgaattgtaatttgtgtagatcttacaatagaatttaaaatatctactgtttcttcatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74242072|gb|DT649986.1|DT649986
EST:     CTGGGAGTTATTCCACTAATGAAAAATGGGCAACCACTCCCCTTTGACAG                         ATTGACCGCTAGCAAGTATCTCAAAGATGCTGGAGATGCCCATGGTACAGT
genomic: CTGGGAGTTATTCCACTAATGAAAAATGGGCAACCACTCCCCTTTGACAGgttagacaaa ... ctttctttagATTGACCGCTAGCAAGTATCTCAAAGATGCTGGAGATGCCCATGGTACAGT
EST: gi|32934567|gb|CF039379.1|CF039379
EST:     CTGGGAGTTATTCCACTAATGAAAAATGGGCAACCACTCCCCTTTGACAG                         ATTGGCCGCTAGCAAGTATCTCAAAGATGCTGGAGATGCCCATGGT
genomic: CTGGGAGTTATTCCACTAATGAAAAATGGGCAACCACTCCCCTTTGACAGgttagacaaa ... ctttctttagATTGACCGCTAGCAAGTATCTCAAAGATGCTGGAGATGCCCATGGT
EST: gi|32835096|gb|CD974774.1|CD974774
EST:     CTGGGAGTTATTCCACTAATGAAAAATGGGCAACCACTCCCCTTTGACAG                         ATTGGCCGCTAGCAAGTATCTCAAAGATGCTGGAGATGCCCATGGTA
genomic: CTGGGAGTTATTCCACTAATGAAAAATGGGCAACCACTCCCCTTTGACAGgttagacaaa ... ctttctttagATTGACCGCTAGCAAGTATCTCAAAGATGCTGGAGATGCCCATGGTA
EST: gi|78092274|gb|DV520648.1|DV520648
EST:     CTGGGAGTTATTCCACTAATGAAAAATGGGCAACCACTCCCCTTTGACAG                         ATTGACCGCTAGCAAGTATCTCAAAGATGCTGGAGATGCCCATGGTACAGT
genomic: CTGGGAGTTATTCCACTAATGAAAAATGGGCAACCACTCCCCTTTGACAGgttagacaaa ... ctttctttagATTGACCGCTAGCAAGTATCTCAAAGATGCTGGAGATGCCCATGGTACAGT
EST: gi|148938789|gb|EC883127.2|EC883127
EST:     CTGGGAGTTATTCCACTAATGAAAAATGGGCAACCACTCCCCTTTGACAG                         ATTGACCGCTAGCAAGTATCTCAAAGATGCTGGAGATGCCCATGGTACAGT
genomic: CTGGGAGTTATTCCACTAATGAAAAATGGGCAACCACTCCCCTTTGACAGgttagacaaa ... ctttctttagATTGACCGCTAGCAAGTATCTCAAAGATGCTGGAGATGCCCATGGTACAGT
EST: gi|32928445|gb|CF033257.1|CF033257
EST:     CTGGGAGTTATTCCACTAATGAAAAATGGGCAACCACTCCCCTTTGACAG                         ATTGGCCGCTAGCAAGTATCTCAAAGATGCTGGAGATGCCCATGGT
genomic: CTGGGAGTTATTCCACTAATGAAAAATGGGCAACCACTCCCCTTTGACAGgttagacaaa ... ctttctttagATTGACCGCTAGCAAGTATCTCAAAGATGCTGGAGATGCCCATGGT
EST: gi|76917242|gb|DV166726.1|DV166726
EST:     CTGGGAGTTATTCCACTAATGAAAAATGGGCAACCACTCCCCTTTGACAG                         ATTGACCGCTAGCAAGTATCTCAAAGATGCTGGAGATGCCCATGGTACAGT
genomic: CTGGGAGTTATTCCACTAATGAAAAATGGGCAACCACTCCCCTTTGACAGgttagacaaa ... ctttctttagATTGACCGCTAGCAAGTATCTCAAAGATGCTGGAGATGCCCATGGTACAGT
EST: gi|211349360|gb|FL434476.1|FL434476
EST:     CTGGGAGTTATTCCACTAATGAAAAATGGGCAACCACTCCCCTTTGACAG                         ATTGGCCGCTAGCAAGTATCTCAAAGATGCTGGAGATGCCCATGGTACAGT
genomic: CTGGGAGTTATTCCACTAATGAAAAATGGGCAACCACTCCCCTTTGACAGgttagacaaa ... ctttctttagATTGACCGCTAGCAAGTATCTCAAAGATGCTGGAGATGCCCATGGTACAGT
EST: gi|78027443|gb|DV495830.1|DV495830
EST:     CTGGGAGTTATTCCACTAATGAAAAATGGGCAACCACTCCCCTTTGACAG                         ATTGGCCGCTAGCAAGTATCTCAAAGATGCTGGAGATGCCCATGGTACAGT
genomic: CTGGGAGTTATTCCACTAATGAAAAATGGGCAACCACTCCCCTTTGACAGgttagacaaa ... ctttctttagATTGACCGCTAGCAAGTATCTCAAAGATGCTGGAGATGCCCATGGTACAGT