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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCGTGGCTTCCTCGGCAAACCTTTGGGCACTCATCATGGACGCAGGAACTGGTTTCTGTTCTCAGGTTTATGAGCTCTCACCAGTTTTCCTCCACAAGgtacagtattatactatccgagtgaagcctgacgaccatacctaataattaattgatttagccaggaagcgtaactctgtttctgattatacacag

Basic information

species Zea mays
transcript GRMZM2G037923_T02
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G037923_T02 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os07g07560.2 (Oryza sativa), 5'ss of exon 13
CAGCGTGGCTTCCTCGGCAAACCTTTGGGCACTCATCATGGACGCAGGAACTGGTTTCTGTTCTCAGGTTTATGAGCTCTCACCAGTTTTCCTCCACAAGgtacagtattatactatccgagtgaagcctgacgacca-tacctaataattaattgatttagccaggaagcgtaactctgtttctgattatacacag
  | ||||| || || ||||| |||||||| ||||| ||||| |||||||||||||||  |||||| ||| ||||||||||||||||||| || || |||||| ||||  || || |     ||| |  |||  |  | ||| |    |||| ||| ||  ||   ||  | ||||||||||||  |||||||| ||
TTGTGTGGCGTCTTCAGCAAATCTTTGGGCCCTCATAATGGATGCAGGAACTGGTTTCCTTTCTCAAGTTCATGAGCTCTCACCAGTTTTTCTGCATAAGgtaaagtacaat-ctgt-----tgaggtgtgataattagtacttgg--attatttgttt--gctgagagtcctaactctgtttc-aattatacatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32869986|gb|CF009668.1|CF009668
EST:     CTGGTTTCTGTTCTCAGGTTTATGAGCTCTCACCAGTTTTCCTCCACAAG                         GACTGGATAATGGAGCAGTGGGAGAAAAGCTACTACATAACAGCAATTGCT
genomic: CTGGTTTCTGTTCTCAGGTTTATGAGCTCTCACCAGTTTTCCTCCACAAGgtacagtatt ... ttatacacagGACTGGATAATGGAGCAGTGGGAGAAAAGCTACTACATAACAGCAATTGCT
EST: gi|21432270|gb|BQ547760.1|BQ547760
EST:     CTGGTTTCTGTTCTCAGGTTTATGAGCTCTCACCAGTTTTCCTCCACAAG                         GACTGGATAATGGAGCAGTGGGAGAAAAGCTACTACATAACAGTCAATTGC
genomic: CTGGTTTCTGTTCTCAGGTTTATGAGCTCTCACCAGTTTTCCTCCACAAGgtacagtatt ... ttatacacagGACTGGATAATGGAGCAGTGGGAGAAAAGCTACTACATAACAG-CAATTGC
EST: gi|22473314|gb|BU037794.1|BU037794
EST:     CTGGTTTCTGTTCTCAGGTTTATGAGCTCTCACCAGTTTTCCTCCACAAG                         GACTGGATAATGGAGCAGTGGGAGAAAAGCTACTACATAACAGCAATTGCT
genomic: CTGGTTTCTGTTCTCAGGTTTATGAGCTCTCACCAGTTTTCCTCCACAAGgtacagtatt ... ttatacacagGACTGGATAATGGAGCAGTGGGAGAAAAGCTACTACATAACAGCAATTGCT
EST: gi|33097651|gb|CF057611.1|CF057611
EST:     CTGGTTTCTGTTCTCAGGTTTATGAGCTCTCACCAGTTTTCCTCCACAAG                         GACTGGATAATGGAGCAGTGGGAGAAAAGCTACTACATAACAGCAATTGCT
genomic: CTGGTTTCTGTTCTCAGGTTTATGAGCTCTCACCAGTTTTCCTCCACAAGgtacagtatt ... ttatacacagGACTGGATAATGGAGCAGTGGGAGAAAAGCTACTACATAACAGCAATTGCT
EST: gi|33096688|gb|CF056682.1|CF056682
EST:     CTGGTTTCTGTTCTCAGGTTTATGAGCTCTCACCAGTTTTCCTCCACAAG                         GACTGGATAATGGAGCAGTGGGAGAAAAGCTACTACATAACAGCAATTGCT
genomic: CTGGTTTCTGTTCTCAGGTTTATGAGCTCTCACCAGTTTTCCTCCACAAGgtacagtatt ... ttatacacagGACTGGATAATGGAGCAGTGGGAGAAAAGCTACTACATAACAGCAATTGCT
EST: gi|22713641|gb|BU197414.1|BU197414
EST:     CTGGTTTCTGTTCTCAGGTTTATGAGCTCTCACCAGTTTTCCTCCACAAG                         GACTGGATAATGGAGCAGTGGGAGAAAAGCTACTACATAACAGCAATTGCT
genomic: CTGGTTTCTGTTCTCAGGTTTATGAGCTCTCACCAGTTTTCCTCCACAAGgtacagtatt ... ttatacacagGACTGGATAATGGAGCAGTGGGAGAAAAGCTACTACATAACAGCAATTGCT
EST: gi|22545509|gb|BU097868.1|BU097868
EST:     CTGGTTTCTGTTCTCAGGTTTATGAGCTCTCACCAGTTTTCCTCCACAAG                         GACTGGATAATGGAGCAGTGGGAGAAAAGCTACTACATAACAGCAATTGCT
genomic: CTGGTTTCTGTTCTCAGGTTTATGAGCTCTCACCAGTTTTCCTCCACAAGgtacagtatt ... ttatacacagGACTGGATAATGGAGCAGTGGGAGAAAAGCTACTACATAACAGCAATTGCT
EST: gi|31355521|gb|CD439878.1|CD439878
EST:     CTGGTTTCTGTTCTCAGGTTTATGAGCTCTCACCAGTTTTCCTCCACAAG                         GACTGGATAATGGAGCAGTGGGAGAAAAGCTACTACATAACAGCAATTGCT
genomic: CTGGTTTCTGTTCTCAGGTTTATGAGCTCTCACCAGTTTTCCTCCACAAGgtacagtatt ... ttatacacagGACTGGATAATGGAGCAGTGGGAGAAAAGCTACTACATAACAGCAATTGCT
EST: gi|21987385|gb|BQ778913.1|BQ778913
EST:     CTGGTTTCTGTTCTCAGGTTTATGAGCTCTCACCAGTTTTCCTCCACAAG                         GACTGGATAATGGAGCAGTGGGAGAAAAGCTACTACATAACAGCAATTGCT
genomic: CTGGTTTCTGTTCTCAGGTTTATGAGCTCTCACCAGTTTTCCTCCACAAGgtacagtatt ... ttatacacagGACTGGATAATGGAGCAGTGGGAGAAAAGCTACTACATAACAGCAATTGCT
EST: gi|87156443|gb|DY401232.1|DY401232
EST:     CTGGTTTCTGTTCTCAGGTTTATGAGCTCTCACCAGTTTTCCTCCACAAG                         GACTGGATAATGGAGCAGTGGGAGAAAAGCTACTACATAACAGCAATTGCT
genomic: CTGGTTTCTGTTCTCAGGTTTATGAGCTCTCACCAGTTTTCCTCCACAAGgtacagtatt ... ttatacacagGACTGGATAATGGAGCAGTGGGAGAAAAGCTACTACATAACAGCAATTGCT
EST: gi|26559413|gb|CA831648.1|CA831648
EST:     CTGGTTTCTGTTCTCAGGTTTATGAGCTCTCACCAGTTTTCCTCCACAAG                         GACTGGATAATGGAGCAGTGGGAGAAAAGCTACTACATAACAGCAATTGCT
genomic: CTGGTTTCTGTTCTCAGGTTTATGAGCTCTCACCAGTTTTCCTCCACAAGgtacagtatt ... ttatacacagGACTGGATAATGGAGCAGTGGGAGAAAAGCTACTACATAACAGCAATTGCT
EST: gi|31356845|gb|CD441202.1|CD441202
EST:     CTGGTTTCTGTTCTCAGGTTTATGAGCTCTCACCAGTTTTCCTCCACAAG                         GACTGGATAATGGAGCAGTGGGAGAAAAGCTACTACATAACAGCAATTGCT
genomic: CTGGTTTCTGTTCTCAGGTTTATGAGCTCTCACCAGTTTTCCTCCACAAGgtacagtatt ... ttatacacagGACTGGATAATGGAGCAGTGGGAGAAAAGCTACTACATAACAGCAATTGCT