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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATGATGTAGATCAAGAATTAGATGATGCCGAGCGAATGCTGAGTGGAAAATTCACTGAAACCAGTGCAAGTGCTTGTGCTGACCTCTATGACCACAAGgtttgatatttttttatcttaagtggcatattaaaggacaggtctagcgcagtggtgagagccttcccaccgagccaaaggtcttgggttcgacgcagtc...

Basic information

species Zea mays
transcript GRMZM2G036872_T01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G036872_T02 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os07g46450.3 (Oryza sativa), 5'ss of exon 7
AAATGATGTAGATCAAGAATTAGATGATGCCGAGCGAATGCTGAGTGGAAAATTCACTGAAACCAGTGCAAGTGCTTGTGCTGACCTCTATGACCACAAGgtttgatatttttttatcttaagtggcatattaaaggacaggtctagcgcagtggtgagagccttcccaccgagccaaaggtcttgggttcgacgcagtc----
 ||||||| ||||||||||||||||||  | ||||| ||  ||||||||||||| | ||||||||||||| |  ||  || ||||||||||||| |||||||||| | |||     ||||||      || |       | || |     | |      | | |    || |  | ||   | |   ||    |  |       
GAATGATGCAGATCAAGAATTAGATGACTCTGAGCGCATATTGAGTGGAAAATTAAGTGAAACCAGTGCATGCACTGCTGGTGACCTCTATGACTACAAGgtttggtgtttgca-gtcttaaaatttttaatcggtagtaagtttgatctaatac---aatcatatatacagttcgaatattttcaagtcaatcatatatacac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19770555|gb|BQ035276.1|BQ035276
EST:     AATTCACTGAAACCAGTGCAAGTGCTTGTGCTGACCTCTATGACCACAAG                         GAAGTTAATGGCAATAGTTCAGACACTGAGCTCTTTGTTGAGGATCACACA
genomic: AATTCACTGAAACCAGTGCAAGTGCTTGTGCTGACCTCTATGACCACAAGgtttgatatt ... aggacaacagGAAGTTAATGGCAATAGTTCAGACACTGAGCTCTTTGTTGAGGATCACACA
EST: gi|211048682|gb|FL410396.1|FL410396
EST:     ATTCACTGAAACCAGTGCAAGTGCTTGTGCTGACCTCTGATGACCACAAG                         GAAGTTAATGGCAATAGTTCAGACACTGAGCTCTTTGTTGAGGATCACACA
genomic: ATTCACTGAAACCAGTGCAAGTGCTTGTGCTGACCTCT-ATGACCACAAGgtttgatatt ... aggacaacagGAAGTTAATGGCAATAGTTCAGACACTGAGCTCTTTGTTGAGGATCACACA
EST: gi|87154043|gb|DY398832.1|DY398832
EST:     AATTCACTGAAACCAGTGCAAGTGCTTGTGCTGACCTCTATGACCACAAG                         GAAGTTAATGGCAATAGTTCAGACACTGAGCTCTTTGTTGAGGATCACACA
genomic: AATTCACTGAAACCAGTGCAAGTGCTTGTGCTGACCTCTATGACCACAAGgtttgatatt ... aggacaacagGAAGTTAATGGCAATAGTTCAGACACTGAGCTCTTTGTTGAGGATCACACA
EST: gi|211424197|gb|FL420637.1|FL420637
EST:     AATTCACTGAAACCAGTGCAAGTGCTTGTGCTGACCTCTATGACCACAAG                         GAAGTTAATGGCAATAGTTCAGACACTGAGCTCTTTGTTGAGGATCACACA
genomic: AATTCACTGAAACCAGTGCAAGTGCTTGTGCTGACCTCTATGACCACAAGgtttgatatt ... aggacaacagGAAGTTAATGGCAATAGTTCAGACACTGAGCTCTTTGTTGAGGATCACACA
EST: gi|20300520|gb|BQ163463.1|BQ163463
EST:     AATTCACTGAAACCAGTGCAAGTGCTTGTGCTGACCTCTATGACCACAAG                         GAAGTTAATGGCAATAGTTCAGACACTGAGCTCTTTGTTGAGGATCACACA
genomic: AATTCACTGAAACCAGTGCAAGTGCTTGTGCTGACCTCTATGACCACAAGgtttgatatt ... aggacaacagGAAGTTAATGGCAATAGTTCAGACACTGAGCTCTTTGTTGAGGATCACACA
EST: gi|211207671|gb|FL419156.1|FL419156
EST:     AATTCACTGAAACCAGTGCAAGTGCTTGTGCTGACCTCTAKGACCACAAG                         GAAGTTAATGGCAATAGTTCAGACACTGAGCTCTTTGTTGAGGATCACACA
genomic: AATTCACTGAAACCAGTGCAAGTGCTTGTGCTGACCTCTATGACCACAAGgtttgatatt ... aggacaacagGAAGTTAATGGCAATAGTTCAGACACTGAGCTCTTTGTTGAGGATCACACA
EST: gi|211214395|gb|FL379565.1|FL379565
EST:     AATTCACTGAAACCAGTGCAAGTGCTTGTGCTGACCTCTATGACCACAAG                         GAAGTTAATGGCAATAGTTCAGACACTGAGCTCTTTGTTGAGGATCACACA
genomic: AATTCACTGAAACCAGTGCAAGTGCTTGTGCTGACCTCTATGACCACAAGgtttgatatt ... aggacaacagGAAGTTAATGGCAATAGTTCAGACACTGAGCTCTTTGTTGAGGATCACACA