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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCAAGTGAAATGCTCATTGGTTTATATGGACTTTGAAGGTCGCTCTGATGGGCGTTCTGTAAAATCAATTATTGCTCACGTGGCTCCACTGAAACTTgtatgtgaatttaatttgaaatattctttcttgtgcgtgcatggtttagattttacactttaaactaaagaatgctactttctggagcatattctttctt...

Basic information

species Zea mays
transcript GRMZM2G036050_T04
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G036050_T03 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os09g39590.1 (Oryza sativa), 5'ss of exon 13
GTTCAAGTGAAATGCTCATTGGTTTATATGGACTTTGAAGGTCGCTCTGATGGGCGTTCTGTAAAATCAATTATTGCTCACGTGGCTCCACTGAAACTTgtatgtgaatttaatttgaaatattctttcttgtgcgtgcatggtttagattttacactttaaac----taaagaatg-----ctactttctggagcatattctttctt
|| ||||| || || ||||| |  |||||||||||||||||||| ||||||||||| |||||||||||  |||||||||| ||||| ||| | ||||||||| |||        | ||||||  |||  ||  || | |||| |||||  |||| | |||| ||    | |   |||     || |||  |||| |||||  |||   
GTGCAAGTCAAGTGTTCATTAGCATATATGGACTTTGAAGGTCGGTCTGATGGGCGCTCTGTAAAATCTGTTATTGCTCATGTGGCCCCATTAAAACTTgtaagtg-------ctggaaatacccttcttttagcatccatgatttaggatttagaatttatactttttgacacatgattatctccttcttggaacatatattttt--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60348741|gb|DN215714.1|DN215714
EST:     ATGGGCGTTCTGTAAAATCAATTATTGCTCACGTGGCTCCACTGAAACTT                         ATCCTGGTGCATGGATCAGCTGAAGCAACTGAACATTTGAAAATGCACTGC
genomic: ATGGGCGTTCTGTAAAATCAATTATTGCTCACGTGGCTCCACTGAAACTTgtatgtgaat ... ctttttgcagATCCTGGTGCATGGATCAGCTGAAGCAACTGAACATTTGAAAATGCACTGC
EST: gi|211178129|gb|FL062330.1|FL062330
EST:     ATGGGCGTTCTGTAAAATCAATTATTGCTCACGTGGCTCCACTGAAACTT                         ATCCTGGTGCATGGATCAGCTGAAGCAACT
genomic: ATGGGCGTTCTGTAAAATCAATTATTGCTCACGTGGCTCCACTGAAACTTgtatgtgaat ... ctttttgcagATCCTGGTGCATGGATCAGCTGAAGCAACT