Sequence
atgc intronic sequence ATGC exonic sequenceTGGCGAAAGCATGGAGAATGCGTTACGAGCATGCTGTAAAGGTATAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAGgtctgatttatcaacttttgccatgtgttagggtgagtcaaattactaagatctattttttttttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G034143_T01 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os02g17320.1 (Oryza sativa), 5'ss of exon 12
TGGCGAAAGCATGGAGAATGCGTTACGAGCATGCTGTAAAGGTATAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAGgtctgattta-tcaacttttgccatg---tgttagggtgagtcaaattactaagatctattttttttttgcag
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TGGTGAGAGTATGGAGAATGCATTGCGGGCATGCTGCAAAGGTATAAAAATTGGGAAGATTCTTATTCACAGGGAAGGAGACAATGGCAAACAGgtttggtttaatctacttttggcattatttgttggagttagtcaaattactaagctct--tgattccttgcag
upper sequence: GRMZM2G034143_T01 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os11g16370.1 (Oryza sativa), 5'ss of exon 12
TGGCGAAAGCATGGAGAATGCGTTACGAGCATGCTGTAAAGGTATAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAGgtctgattta-tcaacttttg--ccatgtgttagggt-gagtcaaattactaagatctattttttttttgcag
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TGGTGAGAGTATGGAGAATGCATTGCGGGCATGCTGTAAAGGTATAAAAATTGGGAAGATTCTTATTCACAGAGAAGGAGACAATGGCAAACAGgtttggtttaatctacttttgtattgtttgttggagttaagtcacattactgagctct--tgattccttgcag
upper sequence: GRMZM2G034143_T01 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA02G47270.1 (Glycine max), 5'ss of exon 12
TGGCGAAAGCATGGAGAATGCGTTACGAGCATGCTGTAAAGGTATAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAGgtctgatttatcaacttttgc---------catgtgttagggtgagtcaa--attactaagatctattttttttttgcag-------------------------------
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TGGGGAGAGTATGGAAAATGCTCTACGAGCATGCTGCAAAGGTATCAAGATTGGGAAAATTCTTATTCATAGAGAAGGTGACAATGGTCAACAGgtttgtcatctgtgtgtgtgcttgggtatacctgtgtcggattcatttcatgatcactagtgtct-tttttttttggtgattcactaacttgtcctttgattattgagcag
upper sequence: GRMZM2G034143_T01 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA18G08180.1 (Glycine max), 5'ss of exon 12
TGGCGAAAGCATGGAGAATGCGTTACGAGCATGCTGTAAAGGTATAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAGgtctgatttatcaacttttgccatgtgttagggtgagtcaaattactaagatctattttttttttgcag-----------------
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TGGGGAGAGTATGGAGAATGCTTTGAGAGCATGCTGTAAAGGTATCAAGATTGGGAAAATTTTAATTCACAGAGAAGGTGACAATGGTCAGCAGGt-tagttcatctgcatctatggtttggtacaaatctctgtttcatttggtgatactgacatcttatgctttgattaatgatcagc
upper sequence: GRMZM2G034143_T01 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA14G01480.1 (Glycine max), 5'ss of exon 9
------TGGCGAAAGCATGGAGAATGCGTTACGAGCATGCTGTAAAGGTATAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAGgtctg--atttatcaacttttgccatgtgttagggtgagtca------aattactaagatctatt-ttttttttgcag--------------------------------
||| || || ||||| ||||| |||||||||||||| |||||||| ||||||||||| |||||||||||| | ||||| |||||||| |||||||| || |||| ||| | | | ||| ||| || ||||| | | | ||||||||| |
TTTCAGTGGGGAGAGTATGGAAAATGCTTTACGAGCATGCTGCAAAGGTATCAAGATTGGGAAAATTCTTATTCATAGAGAAGGTGACAATGGTCAACAGgtttgtcatttgcgtgtgcttgg-gtatactgttttgattcatttcatgatcactaacttgtcctgttttttttggtgattcactaacttgtcctttgattattgagcag
upper sequence: GRMZM2G034143_T01 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA08G45270.1 (Glycine max), 5'ss of exon 12
TGGCGAAAGCATGGAGAATGCGTTACGAGCATGCTGTAAAGGTATAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAGgtctgatttatcaacttttgccatgtgttagggtgagtcaaattactaagatctattttttttttgcag----------------
||| || || ||||||||||| || ||||||||||||||||||||||||||||||| ||| | ||||| | ||||| |||||||| || ||||| | || ||| | | | | || || | ||| | || | | | ||
TGGGGAGAGTATGGAGAATGCTTTGAGAGCATGCTGTAAAGGTATAAAGATTGGGAAAATTTTAATTCACAGAGAAGGTGACAATGGTCAGCAGgt-tagttcatctgcatctatggtttggtacaaatctctgtttcacttggtgatactgatatcttatgctttgatcaatgatcag
upper sequence: GRMZM2G034143_T01 (Zea mays), 5'ss of exon 12
lower sequence: AT1G55810.1 (Arabidopsis thaliana), 5'ss of exon 12
TGGCGAAAGCATGGAGAATGCGTTACGAGCATGCTGTAAAGGTATAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAGgtctgatttatcaacttttgccatgtgttagggtgagtcaaattactaagatctattttttttttgcag
|| || || |||||||| || | |||||||||| ||||| || || |||||||||||||| |||||| | ||||| |||||||| |||||||| || || | || | ||| || | | | | ||||||| | | | | | |||
CGGTGAGAGTATGGAGAACGCTCTTAGAGCATGCTGCAAAGGCATCAAAATTGGGAAGATTCTGATTCATAGAGAAGGCGACAATGGTCAACAGgtttgtgttcttt-ctctgctcatcacttctcctaact--atttactaacaacaaatggcactcaccag
upper sequence: GRMZM2G034143_T01 (Zea mays), 5'ss of exon 12
lower sequence: AT1G55810.2 (Arabidopsis thaliana), 5'ss of exon 11
TGGCGAAAGCATGGAGAATGCGTTACGAGCATGCTGTAAAGGTATAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAGgtctgatttatcaacttttgccatgtgttagggtgagtcaaattactaagatctattttttttttgcag---------------
|| || || |||||||| || | |||||||||| ||||| || || |||||||||||||| |||||| | ||||| |||||||| |||||||| || || | || | ||| || | | | | ||||||| | | | | | |||
CGGTGAGAGTATGGAGAACGCTCTTAGAGCATGCTGCAAAGGCATCAAAATTGGGAAGATTCTGATTCATAGAGAAGGCGACAATGGTCAACAGgtttgtgttcttt-ctctgctcatcacttctcctaact--atttactaacaacaaatggcactcaccagcttatctacgagaag
upper sequence: GRMZM2G034143_T01 (Zea mays), 5'ss of exon 12
lower sequence: AT4G26510.2 (Arabidopsis thaliana), 5'ss of exon 12
TGGCGAAAGCATGGAGAATGCGTTACGAGCATGCTGTAAAGGTATAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAGgtc--tgatttatc---aacttttgccatgtgttagggtgagtcaaattactaagatctattttttttttgcag
||| || |||||||||||||||||||||||||| || |||||||| ||||| |||||||| || ||||| | ||||| |||||||| |||||||| || | | | | | ||| ||||| | | ||| | | | ||| | | | | ||||
TGGTGAGAGCATGGAGAATGCGTTACGAGCATGTTGCAAAGGTATCAAGATCGGGAAGATCCTAATTCACAGAGAAGGTGACAATGGTCAACAGgtaaacgagtcactcctatttcattccaggtgttctgtttcatca--ctgttgatgtctgtatcactgt-gcag
upper sequence: GRMZM2G034143_T01 (Zea mays), 5'ss of exon 12
lower sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 12
TGGCGAAAGCATGGAGAATGCGTTACGAGCATGCTGTAAAGGTATAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAGgtctgatttatcaacttttgccatgtgttagggtgagtcaaattactaagatctattttttttttgcag-----------------------------------------------------------
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TGGTGAGAGTATGGAGAATGCTTTGCGAGCATGTTGCAAAGGTATCAAAATTGGGAAGATTCTTATCCATAGGGAAGGGGATAACGGTCAGCAGgttggacagatct-ctctctctctgtatccttgtctccca---tgcacagacacactacacacatgcatgcacagatatctatctactaacattttgactgtttttttatgtttcaatgactggacag
upper sequence: GRMZM2G034143_T01 (Zea mays), 5'ss of exon 12
lower sequence: PP1S83_234V6.1 (Physcomitrella patens), 5'ss of exon 12
TGGCGAAAGCATGGAGAATGCGTTACGAGCATGCTGTAAAGGTATAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAGgtctgattta--tcaacttt------tgccatgtgttagggtgagtcaaat-tactaagatctattttttttttg---cag-----------------------------------------------------------------------------------
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CGGGGAGAGCATGGAGAATGCACTGCGGGCGTGCTGCAAAGGCATCAAGATTGGAAAGATTTTGATACATCGCGAAGGAGATAATGGGCAACAGgtatcagtcaatttaatcgtgttggatggtgttcactatttttccctgattgtacgaatattcactcttcatttggttcagtaatgatcagtcttagacttccagcgaggtcaacaatgcaactcatcctttgtttaggctgacttaatttttgcactttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32826280|gb|CD965958.1|CD965958EST: TAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAG CTCATCTATCAAAATTTACCAAAAGATATTGCAAATAG
genomic: TAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAGgtctgattta ... ttttttgcagCTCATCTATCAAAATTTACCAAAAGATATTGCAAATAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGCGAAAGCATGGAGAATGCGTTACGAGCATGCTGTAAAGGTATAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAGgtctgatttatcaacttttgccatgtgttagggtgagtcaaattactaagatctattttttttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA