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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCATCGAGCTTGTATGGAAAGAGAAATATACTCACTATTGGATCATCCTTTTCTCCCAACATTATATACTTCATTCCAGgtcagtcttatgtgctatgctgttgtgttgtgccttgtcttagattcatttaaggttgctaaataaataaatggtacacataacttcatctgcgtttcta...

Basic information

species Zea mays
transcript GRMZM2G032351_T02
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G032351_T01 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os04g23890.3 (Oryza sativa), 5'ss of exon 14
GTTCATCGAGCTTGTATGGAAAGAGAAATATACTCACTATTGGATCATCCTTTTCTCCCAACATTATATACTTCATTCCAGgtcagtcttatgtgctatgctgttgtgttgtgccttgtcttagattcatttaaggttgctaaataaataaat--ggtacacataacttcatctgc-----gtttcta
|| |||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||| ||||| || || |  |    || | |       ||| || ||  ||||  ||||    ||||||  ||||||||     ||| ||||  ||||  |       | |||| 
GTACATCGAGCTTGTATTGAAAGAGAAATATACGCACTATTGGATCATCCATTTCTCCCAACATTGTATACTTCATTTCAGgttagactgacat----tgttatgac-caatgctttatcccagat--attttgtattgctagttaaataaaataattactcatagtttcagttaaatatggcttctg

upper sequence: GRMZM2G032351_T01 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA16G19560.1 (Glycine max), 5'ss of exon 16
GTTCATCGAGCTTGTATGGAAAGAGAAATATACTCACTATTGGATCATCCTTTTCTCCCAACATTATATACTTCATTCCAGgtcagtcttatgtgctatgctgttgtgttgtgccttgtcttagattcatttaaggttgctaaataaataaatggtacacataacttcatctgcgtttcta---
||||| ||  | || || || ||||| ||    ||| ||||||||||||||||||| |||||| |||| || ||||| ||||| | | | |          |||||    | ||   | || |  |  |   |||  || |  | | ||   |     | | |||||    | ||||       
GTTCACCGCTCATGCATTGAGAGAGAGATTATATCATTATTGGATCATCCTTTTCTTCCAACACTATACACCTCATTTCAGgtaaatataacacatctgtatgttgaaccgagcaacgactgaagtgta---aagtgtgatctacatattgttctagtagacaacttataatccgttcagcagt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71434885|gb|DR815935.1|DR815935
EST:     TCACTATTGGATCATCCTTTTCTCCCCAACAT-ATATACTTCATTTCAAG                         ACACCAACACATGTTTGT
genomic: TCACTATTGGATCATCCTTTTCTCCC-AACATTATATACTTCATTCCA-Ggtcagtctta ... tttttttcagACACCAACACATGTTTGT