1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TGATTCAGCTGGTGGTGGTTACATTGATCCCATGGACCTTTACGGAGCTTATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAATgtaagcacaaaaaagatgttctcatgtcatactactattataaagcacaaatgtaattgatgattaggtcatccaaaacaaaaatctaggcttaagttcaatctcctgttgctgtgacctatctttttactcaatatgtggctcgtcatttaataaccaatcttgtcatgctccag
species | Zea mays |
transcript | GRMZM2G030902_T02 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAAT TACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGAEST: gi|60400512|gb|DN233319.1|DN233319
genomic: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAATgtaagcacaa ... catgctccagTACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAAT TACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGAEST: gi|4837587|gb|AI670677.1|AI670677
genomic: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAATgtaagcacaa ... catgctccagTACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAAT TACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGAEST: gi|31405984|gb|CD484716.1|CD484716
genomic: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAATgtaagcacaa ... catgctccagTACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTTGGCAGATTCTGCGGTGGTCTAGATTATAAT TACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGAEST: gi|60356069|gb|DN223042.1|DN223042
genomic: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAATgtaagcacaa ... catgctccagTACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAAT TACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGAEST: gi|4680979|gb|AI629649.1|AI629649
genomic: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAATgtaagcacaa ... catgctccagTACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAAT TACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGAEST: gi|60357001|gb|DN223974.1|DN223974
genomic: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAATgtaagcacaa ... catgctccagTACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAAT TACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGAEST: gi|32847446|gb|CD987127.1|CD987127
genomic: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAATgtaagcacaa ... catgctccagTACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTATAGATTATAAT TACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCTAEST: gi|110218916|gb|EC900814.1|EC900814
genomic: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAATgtaagcacaa ... catgctccagTACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTTGGCAGGTTTTGCGGTGGTCTAGATTATAAT TACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGAEST: gi|110532935|gb|EE037115.1|EE037115
genomic: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAATgtaagcacaa ... catgctccagTACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTTGGCAGGTTTTGCGGTGGTCTAGATTATAAT TACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGAEST: gi|149096473|gb|EE182215.2|EE182215
genomic: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAATgtaagcacaa ... catgctccagTACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTTGGCAGGTTTTGCGGTGGTCTAGATTATAAT TACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGAEST: gi|211425320|gb|FL461581.1|FL461581
genomic: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAATgtaagcacaa ... catgctccagTACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAAT TACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGAEST: gi|37375908|gb|CF624436.1|CF624436
genomic: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAATgtaagcacaa ... catgctccagTACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGA
EST: ATGGTTCAATGAGACCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAAT TACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGAEST: gi|71304924|gb|DR788592.1|DR788592
genomic: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAATgtaagcacaa ... catgctccagTACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAAT TACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGAEST: gi|33103241|gb|CF063201.1|CF063201
genomic: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAATgtaagcacaa ... catgctccagTACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAAT TACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGAEST: gi|60338462|gb|DN205435.1|DN205435
genomic: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAATgtaagcacaa ... catgctccagTACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAAT TACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGAEST: gi|211096440|gb|FL454801.1|FL454801
genomic: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAATgtaagcacaa ... catgctccagTACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAAT TACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGAEST: gi|32938473|gb|CF043292.1|CF043292
genomic: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAATgtaagcacaa ... catgctccagTACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAAT TACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGAEST: gi|33098312|gb|CF058272.1|CF058272
genomic: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAATgtaagcacaa ... catgctccagTACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAAT TACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGAEST: gi|211440740|gb|FL468428.1|FL468428
genomic: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAATgtaagcacaa ... catgctccagTACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAAT TACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGAEST: gi|8666086|gb|BE186902.1|BE186902
genomic: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAATgtaagcacaa ... catgctccagTACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAAT TACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGAEST: gi|60343320|gb|DN210293.1|DN210293
genomic: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAATgtaagcacaa ... catgctccagTACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAAT TACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGAEST: gi|32911368|gb|CF016180.1|CF016180
genomic: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAATgtaagcacaa ... catgctccagTACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGA
EST: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAAT TACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGA
genomic: ATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAATgtaagcacaa ... catgctccagTACGGCTATGGCCCCAGCAGCGGAAGCAGCAGATCAAGGTCGGATTGGCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATTCAGCTGGTGGTGGTTACATTGATCCCATGGACCTTTACGGAGCTTATGGTTCAATGAGATCTTTTGGCAGGTTCTGCGGTGGTCTAGATTATAATgtaagcacaaaaaagatgttctcatgtcatactactattataaagcacaaatgtaattgatgattaggtcatccaaaacaaaaatctaggcttaagttcaatctcctgttgctgtgacctatctttttactcaatatgtggctcgtcatttaataaccaatcttgtcatgctccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC