1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
ATTGCCACCATCTATGTCCATATCTCAAGGGGCGACAAGGAATCTGTCTTCTCAGCTGCAATCTCGAAAGATGGCAGAGCATACAATGATCAGgtaatttctgctttgtttatctagttagagattgcttcagtatctgaccattgtctattcgttgcag
species | Zea mays |
transcript | GRMZM2G030805_T01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CTGTCTTCTCAGCTGCAATCTCGAAAGATGGCAGAGCATACAATGATCAG TTGTTTTCTAGTGCAGCTAATATTCTGTGGAAGATTGGGGGTGATCCCAAAEST: gi|8401235|gb|BE056869.1|BE056869
genomic: CTGTCTTCTCAGCTGCAATCTCGAAAGATGGCAGAGCATACAATGATCAGgtaatttctg ... ttcgttgcagTTGTTTTCTAGTGCGGCTAATATTCTGTGGAAGATTGGGGGTGATCCCAAA
EST: CTGTCTTCTCAGCTGCAATCTCGAAAGATGGCAGAGCATACAATGATCAG TTGTTTTCTAGTGCAGCTAATATTCTGTGGAAGATTGGGGGTGATCCCAAAEST: gi|67013696|gb|CO442445.1|CO442445
genomic: CTGTCTTCTCAGCTGCAATCTCGAAAGATGGCAGAGCATACAATGATCAGgtaatttctg ... ttcgttgcagTTGTTTTCTAGTGCGGCTAATATTCTGTGGAAGATTGGGGGTGATCCCAAA
EST: CTGTCTTCTCAGCTGCAATCTCTAAAGATGGCAGAGCATACAATGATCAG TTGTTTTCTAGTGCAGCTAATATTCTGTGGAAGATTGGGGGTGACCCCAAAEST: gi|78025563|gb|DV493950.1|DV493950
genomic: CTGTCTTCTCAGCTGCAATCTCGAAAGATGGCAGAGCATACAATGATCAGgtaatttctg ... ttcgttgcagTTGTTTTCTAGTGCGGCTAATATTCTGTGGAAGATTGGGGGTGATCCCAAA
EST: AAAGATGGCAGAGCATACAATGATCAG TTGTTTTCTAGTGCAGCTAATATTCTGTGGAAGATTGGGGGTGATCCCAAA
genomic: AAAGATGGCAGAGCATACAATGATCAGgtaatttctg ... ttcgttgcagTTGTTTTCTAGTGCGGCTAATATTCTGTGGAAGATTGGGGGTGATCCCAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGCCACCATCTATGTCCATATCTCAAGGGGCGACAAGGAATCTGTCTTCTCAGCTGCAATCTCGAAAGATGGCAGAGCATACAATGATCAGgtaatttctgctttgtttatctagttagagattgcttcagtatctgaccattgtctattcgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA